View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_17 (Length: 473)

Name: NF2018_low_17
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_17
NF2018_low_17
[»] chr3 (11 HSPs)
chr3 (11-458)||(22947393-22947841)
chr3 (15-456)||(22973233-22973675)
chr3 (41-384)||(22997472-22997815)
chr3 (12-191)||(22943062-22943242)
chr3 (269-458)||(22942862-22943051)
chr3 (45-300)||(22987283-22987539)
chr3 (237-319)||(22914236-22914318)
chr3 (237-319)||(22933773-22933855)
chr3 (12-113)||(23018539-23018641)
chr3 (234-319)||(22939640-22939725)
chr3 (12-105)||(23037461-23037555)
[»] chr8 (2 HSPs)
chr8 (230-283)||(23611365-23611418)
chr8 (43-108)||(23611540-23611606)
[»] chr6 (3 HSPs)
chr6 (230-283)||(14307478-14307531)
chr6 (54-109)||(12439617-12439673)
chr6 (45-108)||(14307653-14307717)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 22947841 - 22947393
Alignment:
Q  11 cataggaaacatacataatcttattggctctcaaccacatagaaaattaagagaattgtcaaa-aaatatggccctttaatgcatcttcaacttggtgaa 109  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22947841 cataggaaacatacataatcttattggctctccaccacatagaaaattaagagaattgtcaaataaatatggccctttaatgcatcttcaacttggtgaa 22947742  T
Q  110 gttttctttactattgtttcatcagcagaatatgcaaaggaaataatgaaaactcatgatgtaatatttgcatcaaggcctttaactctaacctcagaga 209  Q
    || || || | ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||    
T  22947741 gtctttttcattattgtttcctcagcagaatatgctatggaaataatgaaaactcatgatgtaatattttcatcaaggccttctacactaacctcagaga 22947642  T
Q  210 taatcttttatgattcgacagatatagcttttgcaccttttggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagtctaaaacg 309  Q
    || |||| |||||||| |||  |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  22947641 tagtcttctatgattcaacaagtatagctttttcaccttatggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagcataaaacg 22947542  T
Q  310 tgttcaatctctttcgccaatcagggagcaagagatgaataatctcgttaaaagcattgcttcggaagaaggaagcgtcgtcaatctttctcgacaagtt 409  Q
    |||||||||||||| |||||| || || |||||||| ||||||||| | | ||| |||||||||||||||||||| || ||||||||||| | |||||||    
T  22947541 tgttcaatctctttggccaataagagaacaagagattaataatctcatcagaaggattgcttcggaagaaggaagagttgtcaatctttcacaacaagtt 22947442  T
Q  410 gtgtcattgatatattcaatcacttcaagggcggcatttggcaaaaaat 458  Q
    ||| || |||| | ||||||||||||||| || ||||||||||||||||    
T  22947441 gtgccaatgatgttttcaatcacttcaagagctgcatttggcaaaaaat 22947393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 456
Target Start/End: Complemental strand, 22973675 - 22973233
Alignment:
Q  15 ggaaacatacataatcttattggctctcaaccacatagaaaattaagagaattgtcaa-aaaatatggccctttaatgcatcttcaacttggtgaagttt 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  22973675 ggaaacatacataatcttattggctctccaccacatagaaaattaagagaattgtcaacaaaatatggtgctttaatgcatcttcaacttggtgaagttt 22973576  T
Q  114 tctttactattgtttcatcagcagaatatgcaaaggaaataatgaaaactcatgatgtaatatttgcatcaaggcctttaactctaacctcagagataat 213  Q
    | ||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  22973575 tatttactattgtatcctcagcagaatatgctaaggaaataatgaaaactcatgatgttatatttgcgtcaaggcctttaacactaacctcagagataat 22973476  T
Q  214 cttttatgattcgacagatatagcttttgcaccttttggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagtctaaaacgtgtt 313  Q
     ||||||| ||| ||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  22973475 gttttatggttcaacagatatagctttttcaccatatggtgattattggagacagcttagaaagatttgtaccgttgaacttttaagtataaaacgtgtt 22973376  T
Q  314 caatctctttcgccaatcagggagcaagagatgaataatctcgttaaaagcattgcttcggaagaaggaagcgtcgtcaatctttctcgacaagttgtgt 413  Q
    || ||||||| |||||| || || |||||||| || ||||| || |  || |||||||| || |||||||| |||||||||||||||| ||||||| |||    
T  22973375 cagtctctttggccaattagagaacaagagattaaaaatcttgtcagtaggattgcttccgatgaaggaagagtcgtcaatctttctcaacaagttatgt 22973276  T
Q  414 cattgatatattcaatcacttcaagggcggcatttggcaaaaa 456  Q
    || |||| | ||| |||||||||||||| ||||| ||||||||    
T  22973275 caatgatgttttctatcacttcaagggctgcattcggcaaaaa 22973233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 41 - 384
Target Start/End: Complemental strand, 22997815 - 22997472
Alignment:
Q  41 tcaaccacatagaaaattaagagaattgtcaaaaaa-tatggccctttaatgcatcttcaacttggtgaagttttctttactattgtttcatcagcagaa 139  Q
    ||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | | ||| ||||||||| |||||||||    
T  22997815 tcaacaacattgaaaattaagagaattgtcaaaaaaatatggcactttaatgcatcttcaacttggtgaagtctaccttattattgtttcctcagcagaa 22997716  T
Q  140 tatgcaaaggaaataatgaaaactcatgatgtaatatttgcatcaaggcctttaactctaacctcagagataatcttttatgattcgacagatatagctt 239  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||| ||    
T  22997715 tatgctaaggaaataatgaaaactcatgatgttatatttgtatcaaggcctttaactctaacctcggagataatattttatgattcaacaaatataggtt 22997616  T
Q  240 ttgcaccttttggtgattattggagacaacttagaaagatttgtaccgttgaac-ttttaagtctaaaacgtgttcaatctctttcgccaatcagggagc 338  Q
    || |||| | |||||||  ||||||||||||||||||||||||||||||  | | |||||||| ||||||||||||||||||||| ||||||||| || |    
T  22997615 ttccaccctatggtgat--ttggagacaacttagaaagatttgtaccgtaaagctttttaagtataaaacgtgttcaatctctttggccaatcagagaac 22997518  T
Q  339 aagagatgaataatctcgttaaaagcattgcttcggaagaaggaag 384  Q
    |||||||||||||||| |||||||| ||  ||||  ||||||||||    
T  22997517 aagagatgaataatctggttaaaaggatcacttccaaagaaggaag 22997472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 22943242 - 22943062
Alignment:
Q  12 ataggaaacatacataatcttattggctctcaaccacatagaaaattaagagaattgtcaaaaaat-atggccctttaatgcatcttcaacttggtgaag 110  Q
    ||||||||||| ||||||||  ||||||||| || ||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  22943242 ataggaaacatccataatctatttggctctccactacatagaaaattaggagaactgtcaaaaattcatggccctttaatgcatcttcaacttggtgaag 22943143  T
Q  111 ttttctttactattgtttcatcagcagaatatgcaaaggaaataatgaaaactcatgatgtaatatttgcatcaaggcctt 191  Q
    | | |||||  |||||||| ||||| |||||||| ||||| |||||||||||||||||||| | |||| ||||||||||||    
T  22943142 tctgctttataattgtttcctcagctgaatatgctaaggagataatgaaaactcatgatgttacattttcatcaaggcctt 22943062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 269 - 458
Target Start/End: Complemental strand, 22943051 - 22942862
Alignment:
Q  269 cttagaaagatttgtaccgttgaacttttaagtctaaaacgtgttcaatctctttcgccaatcagggagcaagagatgaataatctcgttaaaagcattg 368  Q
    |||||||||||||||||||| |||||||||||  || |||| ||||||||||||| |||| | || || |||||||| | ||||||||| ||||  ||||    
T  22943051 cttagaaagatttgtaccgtagaacttttaagcttacaacgcgttcaatctctttggccagtaagagaacaagagataagtaatctcgtcaaaaagattg 22942952  T
Q  369 cttcggaagaaggaagcgtcgtcaatctttctcgacaagttgtgtcattgatatattcaatcacttcaagggcggcatttggcaaaaaat 458  Q
    |||| || |||||  | ||| |||||||||||| ||| ||||||||| || | | |||||||||||||||||| | ||||||||||||||    
T  22942951 cttcagaggaagggtgtgtcctcaatctttctcaacacgttgtgtcaatgttgttttcaatcacttcaagggctgaatttggcaaaaaat 22942862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 300
Target Start/End: Complemental strand, 22987539 - 22987283
Alignment:
Q  45 ccacatagaaaattaagagaattgtcaaaaaa-tatggccctttaatgcatcttcaacttggtgaagttttctttactattgtttcatcagcagaatatg 143  Q
    |||| ||||||||||||||| ||  ||||||| ||||| || || |||||||| |||||||||||  | || || | | ||||||| ||| |||||  ||    
T  22987539 ccacctagaaaattaagagatttagcaaaaaaatatggacccttgatgcatctacaacttggtgagatatttttcattgttgtttcctcaccagaagttg 22987440  T
Q  144 caaaggaaataatgaaaactcatgatgtaatatttgcatcaaggcctttaactctaacctcagagataatcttttatgattcgacagatatagcttttgc 243  Q
    ||| |||  |  |||||||||||||| | ||||||||||||||||||     ||||  ||  |||||| | | |||  |||| ||||||||||||||| |    
T  22987439 caagggaggtcttgaaaactcatgatattatatttgcatcaaggcctcatcttctagtcttggagatagtatcttacaattcaacagatatagctttttc 22987340  T
Q  244 accttttggtgattattggagacaacttagaaagatttgtaccgttgaacttttaag 300  Q
    ||||| |||||||||||||||||||||||||||||||||| |  |||| ||||||||    
T  22987339 accttatggtgattattggagacaacttagaaagatttgtgctattgagcttttaag 22987283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 22914236 - 22914318
Alignment:
Q  237 cttttgcaccttttggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagtctaaaacgtgttcaatct 319  Q
    ||||| |||||| ||||||||||||||||||||||||||| |||||| |  | ||||||||||||  ||||||||||||||||    
T  22914236 ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatct 22914318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 22933855 - 22933773
Alignment:
Q  237 cttttgcaccttttggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagtctaaaacgtgttcaatct 319  Q
    ||||| |||||| ||||||||||||||||||||||||||| |||||| |  | ||||||||||||  ||||||||||||||||    
T  22933855 ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatct 22933773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 23018641 - 23018539
Alignment:
Q  12 ataggaaacatacataatcttattggctctcaaccacatagaaaattaagagaattgtc-aaaaaatatggccctttaatgcatcttcaacttggtgaag 110  Q
    |||||||| ||||| |||||| |  |||||||||| |||||||||||||| || ||| | ||||||||||| || || ||||||||||||||||| ||||    
T  23018641 ataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttcaacttggagaag 23018542  T
Q  111 ttt 113  Q
    |||    
T  23018541 ttt 23018539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 22939640 - 22939725
Alignment:
Q  234 tagcttttgcaccttttggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagtctaaaacgtgttcaatct 319  Q
    ||||||||||||||| |||||||||||||||| | |||||||| ||||||||  |||| || ||||||  ||||||||| ||||||    
T  22939640 tagcttttgcaccttatggtgattattggagaaaccttagaaaaatttgtacacttgagctattaagttcaaaacgtgtccaatct 22939725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 23037555 - 23037461
Alignment:
Q  12 ataggaaacatacataatcttattggctctcaaccacatagaaaattaagagaatt-gtcaaaaaatatggccctttaatgcatcttcaacttgg 105  Q
    |||||||| ||||| |||||  |  |||||||||| ||||| ||||||||||| || | |||||||||||| ||  | |||||||||||||||||    
T  23037555 ataggaaatatacacaatctgttaagctctcaaccccataggaaattaagagacttggccaaaaaatatggaccagtgatgcatcttcaacttgg 23037461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 23611418 - 23611365
Alignment:
Q  230 gatatagcttttgcaccttttggtgattattggagacaacttagaaagatttgt 283  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  23611418 gatatagctttttcaccttatggtgattattggagacaacttagaaagatttgt 23611365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 23611606 - 23611540
Alignment:
Q  43 aaccacatagaaaattaagagaatt-gtcaaaaaatatggccctttaatgcatcttcaacttggtga 108  Q
    |||||| ||||| ||||||||| || | |||||||||||| || || ||||||||||||||||||||    
T  23611606 aaccacctagaagattaagagatttagccaaaaaatatggacccttgatgcatcttcaacttggtga 23611540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 14307531 - 14307478
Alignment:
Q  230 gatatagcttttgcaccttttggtgattattggagacaacttagaaagatttgt 283  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14307531 gatatagctttttcaccttatggtgattattggagacaacttagaaagatttgt 14307478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 12439673 - 12439617
Alignment:
Q  54 aaattaagagaattgtc-aaaaaatatggccctttaatgcatcttcaacttggtgaa 109  Q
    ||||| ||||||||||| ||||||||||||||| | ||||| || ||||||||||||    
T  12439673 aaattgagagaattgtccaaaaaatatggccctatcatgcacctacaacttggtgaa 12439617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 14307717 - 14307653
Alignment:
Q  45 ccacatagaaaattaagagaatt-gtcaaaaaatatggccctttaatgcatcttcaacttggtga 108  Q
    |||| ||||| ||||||||| || | |||||||||||| || || ||||||||||||||||||||    
T  14307717 ccacctagaagattaagagatttagccaaaaaatatggacccttgatgcatcttcaacttggtga 14307653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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