View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_19 (Length: 468)
Name: NF2018_low_19
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_19 |
 | |
|
| [»] scaffold0534 (2 HSPs) |
| | |
|
| [»] scaffold0455 (1 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
| [»] scaffold0581 (1 HSPs) |
| | |
|
| [»] scaffold0221 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 88 - 454
Target Start/End: Original strand, 17051405 - 17051771
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17051405 |
caagagaatgaagaacaattggaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
17051504 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17051505 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtacatggaaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
17051604 |
T |
|
| Q |
288 |
ctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
387 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17051605 |
ctttgggggattggttcatatctgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
17051704 |
T |
|
| Q |
388 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaattg |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17051705 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaattg |
17051771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 88 - 452
Target Start/End: Complemental strand, 17230136 - 17229772
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |
|
|
| T |
17230136 |
caagagaatgaagaacaattggaggaggaacgaaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcatatgaggaaaatgcaaaccaaaaac |
17230037 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
287 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17230036 |
tgagacataagatgagtatacttaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaatgtattgaatgaaagtgg |
17229937 |
T |
|
| Q |
288 |
ctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
387 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
17229936 |
ctttgggggaatggttcatatctgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaaaaaaacatgtggatagca |
17229837 |
T |
|
| Q |
388 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17229836 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
17229772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 88 - 452
Target Start/End: Original strand, 5067 - 5431
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5067 |
caagagaatgaagaacaattggaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
5166 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5167 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtacatggaaaacaaagaaaggaggagatcattaacttattgaatgaaagtgg |
5266 |
T |
|
| Q |
288 |
ctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
387 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5267 |
ctttgggggattggttcatatctgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
5366 |
T |
|
| Q |
388 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5367 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
5431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 9750 - 9612
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9750 |
caagagaatgaagaacaattggaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
9651 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatctta |
226 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9650 |
tgagacataagactagtatacctaaggtatatgatctta |
9612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 88 - 452
Target Start/End: Complemental strand, 7745 - 7381
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7745 |
caagagaatgaagaacaattggaggaggagcggaaagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaagaaaatgcaaagcaaagac |
7646 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
287 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7645 |
tgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaacgaaagtgg |
7546 |
T |
|
| Q |
288 |
ctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
387 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7545 |
ctttgggggaatggttcatatctgcaactggaacagagtctacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
7446 |
T |
|
| Q |
388 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7445 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
7381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 88 - 452
Target Start/End: Complemental strand, 28129158 - 28128794
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28129158 |
caagagaatgaagaacaattggaggaggagcggaaagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaagaaaatgcaaagcaaagac |
28129059 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
287 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28129058 |
tgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaacgaaagtgg |
28128959 |
T |
|
| Q |
288 |
ctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
387 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128958 |
ctttgggggaatggttcatatctgcaactggaacagagtcaacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
28128859 |
T |
|
| Q |
388 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128858 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
28128794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 196 - 452
Target Start/End: Complemental strand, 18758042 - 18757786
Alignment:
| Q |
196 |
aagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggg |
295 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||||||| ||| |||| |||||| |||||||| ||| | | |||||||| ||||||||||| | |
|
|
| T |
18758042 |
aagatgagtatatctaaggtatatgagcttatgcattcagtacatgacaaaagaagaaaagaggagataattgagcttttgaatgacagtggctttggag |
18757943 |
T |
|
| Q |
296 |
gaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaa |
395 |
Q |
| |
|
||||| | ||||| ||||| || | | |||||||||||||||| |||||||| | |||||||||||||| |||||| | |||||||| | |||||||| |
|
|
| T |
18757942 |
gaatgttgcatatctgcaattgaacaaaagtccacactttctttatggattgggttgttaaaaactttgagaaagagtaaatgtggattacgttaagcaa |
18757843 |
T |
|
| Q |
396 |
gaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
18757842 |
gaccgaggtacttccattcaaagaggatgatgtacatagggtgtatgagcttccaat |
18757786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 324 - 452
Target Start/End: Original strand, 18758137 - 18758265
Alignment:
| Q |
324 |
agtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaa |
423 |
Q |
| |
|
||||||| ||||||||| ||||||| | |||||||||||||| ||| || | |||||||| | |||||||||||||||||||||||||||||||| || |
|
|
| T |
18758137 |
agtccacgctttctttgcggattgggttgttaaaaactttgagaaaaagcaaatgtggattaccttaagcaagaccgaggtacttccattgaaagaagag |
18758236 |
T |
|
| Q |
424 |
gatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||| |||| |||||||||||||| |
|
|
| T |
18758237 |
gatgtacatagggtgtatgagcttccaat |
18758265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 428
Target Start/End: Original strand, 22032755 - 22032978
Alignment:
| Q |
205 |
atacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattc |
304 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| || |||| ||| |||||| || |||| ||| | | |||||||| ||||| ||||| |||||| ||| |
|
|
| T |
22032755 |
atacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgggtttggaggaatggttc |
22032854 |
T |
|
| Q |
305 |
atatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggt |
404 |
Q |
| |
|
|||||||||| |||| | | ||||||| ||||||||||| || | || | | ||||||| || ||||| ||||||||| | | ||||||| || || |
|
|
| T |
22032855 |
atatatgcaaatggacaaaaatccacacattctttgtggaatgagttgtcagacactttgaaaaggagaatatgtggataagactgagcaagatggatgt |
22032954 |
T |
|
| Q |
405 |
acttccattgaaagaggaagatgt |
428 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
22032955 |
gctcccattgaaagaagaagatgt |
22032978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 88 - 452
Target Start/End: Complemental strand, 19850450 - 19850086
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
19850450 |
caagagaatgaagaacaattggaggaggagcggaaagaagaggctaaaagtaaagaaaataatgaaggaagttcagatgaggaaaatgcaaagtaacgac |
19850351 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
287 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19850350 |
tgaggcataagatgagtatatctatggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtgg |
19850251 |
T |
|
| Q |
288 |
ctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagca |
387 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
19850250 |
ctttgggggaatggttcatatctgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaataaaacatgtggatagca |
19850151 |
T |
|
| Q |
388 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19850150 |
ttaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
19850086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 169 - 452
Target Start/End: Original strand, 19379 - 19662
Alignment:
| Q |
169 |
gaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcatta |
268 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19379 |
gaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcatta |
19478 |
T |
|
| Q |
269 |
acgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19479 |
acgtattgaatgaaagtggctttgggggaatggttcatatctgcaactagaacagagtccacactttctttgtggattggatagttaaaaactttgacaa |
19578 |
T |
|
| Q |
369 |
agagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19579 |
agagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
19662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 164 - 452
Target Start/End: Complemental strand, 54758253 - 54757965
Alignment:
| Q |
164 |
atgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54758253 |
atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat |
54758154 |
T |
|
| Q |
264 |
cattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaacttt |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
54758153 |
cattaacgtattgaatgaaagtggctttgggggaatggttcatatctgcaactggaacagagtccatactttctttgtggattggatggttaaaaacttt |
54758054 |
T |
|
| Q |
364 |
gacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54758053 |
gacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
54757965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 149 - 452
Target Start/End: Original strand, 9553474 - 9553777
Alignment:
| Q |
149 |
atgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaaca |
248 |
Q |
| |
|
||||||||||||| ||||| ||||||| | ||||||| |||| || |||||||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
9553474 |
atgaaggaagttcggatgatgaaaatgtgatgcaaagaatgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagtacatggcaaaag |
9553573 |
T |
|
| Q |
249 |
aagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattgg |
348 |
Q |
| |
|
|||||| || ||||| ||| | | |||||||| | ||||||||| |||||| | ||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
9553574 |
aagaaaagatgagataattgagcttttgaatgacaatggctttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgg |
9553673 |
T |
|
| Q |
349 |
atagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttc |
448 |
Q |
| |
|
| |||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||||||||| |
|
|
| T |
9553674 |
gttgttataaactttgagaaagagcacatgtggattacattaagcaagaccgaggtacttccattgaaagaggatgatatacatagggtgtatgagcttc |
9553773 |
T |
|
| Q |
449 |
caat |
452 |
Q |
| |
|
|||| |
|
|
| T |
9553774 |
caat |
9553777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 808537 - 808601
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatga |
152 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
808537 |
caagagaatgaagaacaattggatgaggagtggaaagaagaggctaaaagcaaagaaaagaatga |
808601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 164 - 452
Target Start/End: Complemental strand, 4224 - 3936
Alignment:
| Q |
164 |
atgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4224 |
atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat |
4125 |
T |
|
| Q |
264 |
cattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaacttt |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4124 |
cattaacgtattgaatgaaagtggctttgggggaatggttcatatctggaactggagcagagtccatactttctttgtggattggatagttaaaaacttt |
4025 |
T |
|
| Q |
364 |
gacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4024 |
gacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
3936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 149 - 452
Target Start/End: Original strand, 10566504 - 10566799
Alignment:
| Q |
149 |
atgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaaca |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
10566504 |
atgaaggaagttcagatgatgaaaatgcaaagcaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgaactcagtaaatggcaaaa- |
10566602 |
T |
|
| Q |
249 |
aagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattgg |
348 |
Q |
| |
|
|| ||||| ||||||||||||||||| ||||||||||| |||||| | ||||| || |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
10566603 |
-------gacgagataattaacgtattgaatgacagtggctttggaggaatgttgcatatctggaactggaatagagtccacactttctttgtggattag |
10566695 |
T |
|
| Q |
349 |
atagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttc |
448 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10566696 |
gttgttagaaactttgacaaagagaacatgtggattgcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatagggtctatgagcttc |
10566795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 149 - 452
Target Start/End: Complemental strand, 10569430 - 10569135
Alignment:
| Q |
149 |
atgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaaca |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
10569430 |
atgaaggaagttcagatgatgaaaatgcaaagcaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgaactcagtaaatggcaaaa- |
10569332 |
T |
|
| Q |
249 |
aagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattgg |
348 |
Q |
| |
|
|| ||||| ||||||||||||||||| ||||||||||| |||||| | ||||| || |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
10569331 |
-------gacgagataattaacgtattgaatgacagtggctttggaggaatgttgcatatctggaactggaatagagtccacactttctttgtggattag |
10569239 |
T |
|
| Q |
349 |
atagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttc |
448 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10569238 |
gttgttagaaactttgacaaagagaacatgtggattgcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatagggtctatgagcttc |
10569139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 304 - 452
Target Start/End: Original strand, 42774134 - 42774282
Alignment:
| Q |
304 |
catatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgagg |
403 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||||||||||||| | |||| ||||||| |||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
42774134 |
catatctgcaactggaaaagaatccacactttctttgtggattgggttgttagaaactttcacaaagagaacatgtgcattgtattaagcaagaccgagg |
42774233 |
T |
|
| Q |
404 |
tacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||| |||||||| ||||| |
|
|
| T |
42774234 |
tgcttccattgaaagaggaaaatgtacatagggtgtatgagctcccaat |
42774282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 42774011 - 42774108
Alignment:
| Q |
149 |
atgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaa |
246 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42774011 |
atgaaggaagttcaaatgatgaaaatgtcaagcaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgaattcagtaaatggcaaa |
42774108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 10566401 - 10566462
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
10566401 |
caagagaatgaagaacaattggaggaggagcggaaagaagaggctaaaagtaaagaaaagaa |
10566462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 10569529 - 10569472
Alignment:
| Q |
92 |
agaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaa |
149 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
10569529 |
agaatgaagaacaattggaggaggagcggaaagaagaggctaaaagtaaagaaaagaa |
10569472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 149 - 452
Target Start/End: Original strand, 1375263 - 1375567
Alignment:
| Q |
149 |
atgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaaca |
248 |
Q |
| |
|
||||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||| |||||| ||||| || |||||||| |
|
|
| T |
1375263 |
atgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcaatacatggcaaaag |
1375362 |
T |
|
| Q |
249 |
aagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacaga-gtccacactttctttgtggattg |
347 |
Q |
| |
|
|||||| |||||||| ||| | | |||||||| | ||||||||| |||||| | ||||| |||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
1375363 |
aagaaaagaggagataattgagcttttgaatgacaatggctttggaggaatgttgcatatctgcaactggaccaaaagtccacactttctttgtggattg |
1375462 |
T |
|
| Q |
348 |
gatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagctt |
447 |
Q |
| |
|
| | |||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
1375463 |
ggttgttagaaactttgacaaaaagcacatgtggattacattaagcaagaccgaggtacttccattgaaagaggatgatgtacatagggtgtatgagctt |
1375562 |
T |
|
| Q |
448 |
ccaat |
452 |
Q |
| |
|
||||| |
|
|
| T |
1375563 |
ccaat |
1375567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 149 - 452
Target Start/End: Original strand, 17622679 - 17622982
Alignment:
| Q |
149 |
atgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaaca |
248 |
Q |
| |
|
||||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||| | |||| |||||||| |||| ||| |
|
|
| T |
17622679 |
atgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcctatgcattcagtacatggaaaaag |
17622778 |
T |
|
| Q |
249 |
aagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattgg |
348 |
Q |
| |
|
|||||| |||||||| ||| | | |||||||| ||||||||||| |||||| | ||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17622779 |
aagaaaagaggagataattgagcttttgaatgacagtggctttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgg |
17622878 |
T |
|
| Q |
349 |
atagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttc |
448 |
Q |
| |
|
| |||| ||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| |
|
|
| T |
17622879 |
gttgttagaaactttaagaaagagcacatgtggattacattaagcaagaccgaggtacttccattgaaagatgatgatgtacatagggtgtatgagcttc |
17622978 |
T |
|
| Q |
449 |
caat |
452 |
Q |
| |
|
|||| |
|
|
| T |
17622979 |
caat |
17622982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 149 - 452
Target Start/End: Original strand, 17629862 - 17630165
Alignment:
| Q |
149 |
atgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaaca |
248 |
Q |
| |
|
||||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||| | |||| |||||||| |||| ||| |
|
|
| T |
17629862 |
atgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcctatgcattcagtacatggaaaaag |
17629961 |
T |
|
| Q |
249 |
aagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattgg |
348 |
Q |
| |
|
|||||| |||||||| ||| | | |||||||| ||||||||||| |||||| | ||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17629962 |
aagaaaagaggagataattgagcttttgaatgacagtggctttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgg |
17630061 |
T |
|
| Q |
349 |
atagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttc |
448 |
Q |
| |
|
| |||| ||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| |
|
|
| T |
17630062 |
gttgttagaaactttaagaaagagcacatgtggattacattaagcaagaccgaggtacttccattgaaagatgatgatgtacatagggtgtatgagcttc |
17630161 |
T |
|
| Q |
449 |
caat |
452 |
Q |
| |
|
|||| |
|
|
| T |
17630162 |
caat |
17630165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 428
Target Start/End: Complemental strand, 11980794 - 11980571
Alignment:
| Q |
205 |
atacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattc |
304 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| || |||| ||| |||||| || |||| ||| | | |||||||| ||||| ||||| |||||| ||| |
|
|
| T |
11980794 |
atacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagatcagataattcaacttttgaatgagagtgggtttggaggaatggttc |
11980695 |
T |
|
| Q |
305 |
atatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggt |
404 |
Q |
| |
|
|||||||||| |||| | | ||||||| ||||||||||| ||| | || | | ||||||| || ||||| ||||||||| | | |||||||| || || |
|
|
| T |
11980694 |
atatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcagacactttgaaaaggagaatatgtggataagactgagcaagacggatgt |
11980595 |
T |
|
| Q |
405 |
acttccattgaaagaggaagatgt |
428 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
11980594 |
gctcccattgaaagaagaagatgt |
11980571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 155 - 452
Target Start/End: Original strand, 23556 - 23853
Alignment:
| Q |
155 |
gaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaa |
254 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||| | ||||||||||||| |||||||||||| |||||| ||| |||| || ||||| |||||| |
|
|
| T |
23556 |
gaagttcaaatgatgaaaatgcaaaacaaagactgaggtacaagatgagtatacgtaaggtatatgagcttatgcattaagtacattgcaaaagaagaaa |
23655 |
T |
|
| Q |
255 |
ggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattcatatatgcaactggaacagagtccacactttctttgtggattggatagtt |
354 |
Q |
| |
|
||||||| ||| | | |||||||| ||||||||||| |||||| | |||||||||||||||| | ||||||||||||||||||||||||| | ||| |
|
|
| T |
23656 |
ataggagataattgagcttttgaatgacagtggctttggaggaatgttgcatatatgcaactggacaaaagtccacactttctttgtggattgggttgtt |
23755 |
T |
|
| Q |
355 |
aaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaat |
452 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
23756 |
agaaactttgacaaagagaacatgtggattacattaagaaagactgaggtacttccattgaaagaggatgatgtacatagggtgtatgagcttccaat |
23853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 30407466 - 30407608
Alignment:
| Q |
164 |
atgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30407466 |
atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat |
30407565 |
T |
|
| Q |
264 |
cattaacgtattgaatgaaagtggctttgggggaatgattcat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30407566 |
cattaacgtattgaatgaaagtggctttgggggaatggttcat |
30407608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 25192111 - 25192207
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaa |
184 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25192111 |
caagcgaatgaagaacaattggaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgatggaagttcagatgaggaaaatgcaaagcaaa |
25192207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 28050495 - 28050357
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28050495 |
caagagaatgaagaacaattggaggaggagcgaaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagac |
28050396 |
T |
|
| Q |
188 |
tgagacataagatgagtatacctaaggtatatgatctta |
226 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28050395 |
tgagacataagactagtatacctaaggtatatgatctta |
28050357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 27971015 - 27970951
Alignment:
| Q |
88 |
caagagaatgaagaacaattggaggaggaacggaaagaagaggctaaaagcaaagaaaagaatga |
152 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27971015 |
caagagaatgaagaacaattggatgaggagtggaaagaagaggctaaaagcaaagaaaagaatga |
27970951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 428
Target Start/End: Original strand, 21157649 - 21157872
Alignment:
| Q |
205 |
atacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattc |
304 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| || |||| ||| |||||| || |||| ||| | | |||||||| ||||| ||||| |||||| ||| |
|
|
| T |
21157649 |
atacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgggtttggaggaatggttc |
21157748 |
T |
|
| Q |
305 |
atatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggt |
404 |
Q |
| |
|
|||||||||| |||| | | ||||||| ||||||||||| ||| | || ||| ||||||| || ||||| ||||||||| | | |||||||| || || |
|
|
| T |
21157749 |
atatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcaaacactttgaaaaggagaatatgtggataagactgagcaagacggatgt |
21157848 |
T |
|
| Q |
405 |
acttccattgaaagaggaagatgt |
428 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
21157849 |
gctcccattgaaagaagaagatgt |
21157872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 428
Target Start/End: Original strand, 44342906 - 44343129
Alignment:
| Q |
205 |
atacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattc |
304 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| || |||| ||| |||||| || |||| ||| | | |||||||| ||||| ||||| |||||| ||| |
|
|
| T |
44342906 |
atacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgggtttggaggaatggttc |
44343005 |
T |
|
| Q |
305 |
atatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggt |
404 |
Q |
| |
|
|||||||||| |||| | | ||||||| ||||||||||| || | || | | ||||||| || ||||| ||||||||| | | ||||||| || || |
|
|
| T |
44343006 |
atatatgcaaatggacaaaaatccacacattctttgtggaatgagttgtcagacactttgaaaaggagaatatgtggataagactgagcaagatggatgt |
44343105 |
T |
|
| Q |
405 |
acttccattgaaagaggaagatgt |
428 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
44343106 |
gctcccattgaaagaagaagatgt |
44343129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 428
Target Start/End: Original strand, 14638 - 14861
Alignment:
| Q |
205 |
atacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattc |
304 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| || |||| ||| |||||| || |||| ||| | | |||||||| ||||| ||||| |||||| ||| |
|
|
| T |
14638 |
atacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgggtttggaggaatggttc |
14737 |
T |
|
| Q |
305 |
atatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggt |
404 |
Q |
| |
|
|||||||||| |||| | | ||||||| ||||||||||| ||| | || ||| ||||||| || ||||| ||||||||| | | |||||||| || || |
|
|
| T |
14738 |
atatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcaaacactttgaaaaggagaatatgtggataagactgagcaagacggatgt |
14837 |
T |
|
| Q |
405 |
acttccattgaaagaggaagatgt |
428 |
Q |
| |
|
|| ||||||| ||| |||||||| |
|
|
| T |
14838 |
gctcccattgacagaagaagatgt |
14861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 428
Target Start/End: Complemental strand, 107821 - 107598
Alignment:
| Q |
205 |
atacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatgattc |
304 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| || |||| ||| |||||| || |||| ||| | | |||||||| ||||| ||||| |||||| ||| |
|
|
| T |
107821 |
atacctaaggtctatgacctaatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgggtttggaggaatggttc |
107722 |
T |
|
| Q |
305 |
atatatgcaactggaacagagtccacactttctttgtggattggatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggt |
404 |
Q |
| |
|
|||||||||| |||| | | ||||||| ||||||||||| ||| | || | | ||||||| || ||||| ||||||||| | | |||||||| || || |
|
|
| T |
107721 |
atatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcagacactttgaaaaggagaatatgtggataagactgagcaagacggatgt |
107622 |
T |
|
| Q |
405 |
acttccattgaaagaggaagatgt |
428 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
107621 |
gctcccattgaaagaagaagatgt |
107598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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