View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_25 (Length: 420)
Name: NF2018_low_25
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 25321104 - 25321406
Alignment:
| Q |
17 |
atatggtaccgttttcatgtatgtaaattggaaaatttccataattgttcttcatccagtctagcacaccttgcaaaatccatggtgtaattggattct- |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25321104 |
atatggtaccgttttcatgtatgtaaattggaaactttccataattgttcttcatccagtctagcacaccttgcaaaatccatggtgtaattggattctt |
25321203 |
T |
|
| Q |
116 |
---aaaccaaccagttggttagtggacaatatagaatcttcatccttnnnnnnntgtaaaaataaatgagtagacgaacagcttgatggtacctcatttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
25321204 |
aaaaaaccaaccagttggttagtggacaatatgaaatcttgatcctt------------aaaaaaatgagtagaggaacaacttgatgttacctcatttg |
25321291 |
T |
|
| Q |
213 |
gagatgtatgatttgatgtaagcactacaacaagaaagaacattaattagttgtttatgttcctcaaaattagaggaaggtggattcgcgttatagatag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| | |||||||||| |
|
|
| T |
25321292 |
gagatgtatgatttgatgtaagcactacaacaagaaagaacattaattagttgtttatattcctcaaaattggaggaaggatgatcgacattatagatag |
25321391 |
T |
|
| Q |
313 |
ttttgaatttgagtt |
327 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
25321392 |
ttttgattttgagtt |
25321406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 401
Target Start/End: Original strand, 25321417 - 25321508
Alignment:
| Q |
311 |
agttttgaatttgagttgtgtatcatcacaacttttcaatgcagattt-gatttcttttttaaatctaaaatatcaagtttgaaatctggac |
401 |
Q |
| |
|
||||| |||||| || |||||| | |||||| ||||||||| || ||| ||||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
25321417 |
agtttcgaatttaagctgtgtaccgtcacaatttttcaatgtaggttttgatttcttttttaaatctaaagtatcgagtttgaaatttggac |
25321508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 25326881 - 25326928
Alignment:
| Q |
23 |
taccgttttcatgtatgtaaattggaaaatttccataattgttcttca |
70 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25326881 |
taccattttcatgtatgtaaattggaaaatttccataatcattcttca |
25326928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 395
Target Start/End: Complemental strand, 25906428 - 25906398
Alignment:
| Q |
365 |
ttttttaaatctaaaatatcaagtttgaaat |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25906428 |
ttttttaaatctaaaatatcaagtttgaaat |
25906398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University