View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_3 (Length: 732)

Name: NF2018_low_3
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_3
NF2018_low_3
[»] chr3 (1 HSPs)
chr3 (1-723)||(41532992-41533714)


Alignment Details
Target: chr3 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Complemental strand, 41533714 - 41532992
Alignment:
Q  1 taaatttcgtttctggggttgtttaacttttgattttaacacgacccgttacttcaatttttgtttttgaagaaggaatgattattaagaggaacttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533714 taaatttcgtttctggggttgtttaacttttgattttaacacgacccgttacttcaatttttgtttttgaagaaggaatgattattaagaggaacttgaa 41533615  T
Q  101 atctcaaatgccgagtttgaaacggtgtaaactcgctgactcagttggtgatgatgaagagtgttcttatgctcgtaagaagnnnnnnnctaacggttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  41533614 atctcaaatgccgagtttgaaacggtgtaaactcgctgactcagttggtgatgatgaagagtgttcttatgctcgtaagaagaaaaaaactaacggttat 41533515  T
Q  201 tattatcctttgaatcttctaggtgatgttgctgctgggttaactccggtgagttttcatggtttgttgagtggtgtatcggagaagggattctctacgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533514 tattatcctttgaatcttctaggtgatgttgctgctgggttaactccggtgagttttcatggtttgttgagtggtgtatcggagaagggattctctacgt 41533415  T
Q  301 tgtggtgcagccaagttccgtgttcccctagtgaagttgaatcgaactcgaaggaggaaatggttgcggtgaagaagaaacgggttcaaagaccaccatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533414 tgtggtgcagccaagttccgtgttcccctagtgaagttgaatcgaactcgaaggaggaaatggttgcggtgaagaagaaacgggttcaaagaccaccatt 41533315  T
Q  401 agtgagaacttcgagagggcgagttcaggttcttccttcccggtttaatgactctgttcttgataattggaagaaggatggtaagactagcttgcgtgat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533314 agtgagaacttcgagagggcgagttcaggttcttccttcccggtttaatgactctgttcttgataattggaagaaggatggtaagactagcttgcgtgat 41533215  T
Q  501 tttgaagttgaagatgaatttgaatgcaagaaggacagggtagtacagaaaatttgcaatggcaatgttagaaaagggcgaaacaatgagaaaatcggtt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533214 tttgaagttgaagatgaatttgaatgcaagaaggacagggtagtacagaaaatttgcaatggcaatgttagaaaagggcgaaacaatgagaaaatcggtt 41533115  T
Q  601 ataagcaacgtaagtattcggcattgtgtagggatgatgatgttggtgtgagtatgaggtataagagttttggtagaaggaagaattcagttttggatgt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533114 ataagcaacgtaagtattcggcattgtgtagggatgatgatgttggtgtgagtatgaggtataagagttttggtagaaggaagaattcagttttggatgt 41533015  T
Q  701 agatgaagttgatttgatgatgt 723  Q
    |||||||||||||||||||||||    
T  41533014 agatgaagttgatttgatgatgt 41532992  T

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