View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_31 (Length: 373)
Name: NF2018_low_31
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 29 - 363
Target Start/End: Original strand, 15447474 - 15447814
Alignment:
| Q |
29 |
aacaagcattcaaaaatataataagaggccaattctaaccttgtcatcatgattttgatttacattttctagagcatcattggctttagctttccccctc |
128 |
Q |
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| T |
15447474 |
aacaaggattcaaaaaaataataagaggccgattctaaccttatcatcatgattttgatttacattttctatagcatcattggctttagctttccccctc |
15447573 |
T |
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| Q |
129 |
ttattcnnnnnnnngttctttttacttcctctagtctctgtcaaataattataattatactcccaaactaaaaataccacaagcattataaactaggagt |
228 |
Q |
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| T |
15447574 |
ttattcttttttttgttctttctacttcctctagtctctgtcaaataattataattatactcccaaaataaaaataccacaagcattataaactaggagt |
15447673 |
T |
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| Q |
229 |
attagacaaagtttaaatagagacaaaaatttagggata-----aaacaagccaaaatttcctttaattccgtcaatatt-tcattggggacgaaaaata |
322 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |
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| T |
15447674 |
attagataaagtttaaatagagacaaaaatttagggataaaattaaacaagccaaaattttctttaattccgtcaatattgtcattggggacgaaaaaaa |
15447773 |
T |
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| Q |
323 |
tttgcgatagtaagaaaattggaaaacacgacatacctttg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
15447774 |
tttgcgatagtaagaaaattggaaaacacgacatacctttg |
15447814 |
T |
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