View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_32 (Length: 372)
Name: NF2018_low_32
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_32 |
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| [»] scaffold1437 (1 HSPs) |
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Alignment Details
Target: scaffold1437 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 33 - 354
Target Start/End: Complemental strand, 1109 - 788
Alignment:
| Q |
33 |
taattgattgacattttttaaattataaatacttcaaaaagtaatattgttaggttggcaaaggagaaagaggacatttactcatacacatgccagaatt |
132 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||| ||||||| |||||||||||| || |||||||||||| |
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| T |
1109 |
taattgattgacattttttaaattataaatacttcaacaagtaatatttttagattgtcaaagcagaaagatgacatttactcacacgcatgccagaatt |
1010 |
T |
|
| Q |
133 |
tgggggagttttgannnnnnnnnnattgatagaaaataataagcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctctt |
232 |
Q |
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|| || |||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
1009 |
tgtggtagttttaattttttttttattgatagaaaataacaagcctttacatcaaaacaaaatacagatgtaggaatccttaatgttactctaagctcgt |
910 |
T |
|
| Q |
233 |
aagtcttaattatccttgttcatataaaacattgaataggatatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatggaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
909 |
aagtcttaattatccttgttcatataaaacattgaacatgatatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatggaa |
810 |
T |
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| Q |
333 |
acaaccaccaaagattgtcttg |
354 |
Q |
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| T |
809 |
acaaccaccaaagattgtcttg |
788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 33 - 354
Target Start/End: Original strand, 3214959 - 3215281
Alignment:
| Q |
33 |
taattgattgacattttttaaattataaatacttcaaaaagtaatattgttaggttggcaaaggagaaagaggacatttactcatacacatgccagaatt |
132 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||| || |||||||||||| |
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| T |
3214959 |
taattgattgacattttttaaattataaatacttcaacaagtaatattgttaaattgtcaaagcagaaagaggacatttactcacacgcatgccagaatt |
3215058 |
T |
|
| Q |
133 |
tgggggagttttgannnnnnnnnnattgatagaaaata---ataagcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagct |
229 |
Q |
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|| || |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3215059 |
tgtggtagttttgatttttttt--attgatagaaaataataataagcctttacatccaaacaaaatacagatgcatgaatccttaatgttactctaagct |
3215156 |
T |
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| Q |
230 |
cttaagtcttaattatccttgttcatataaaacattgaataggatatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatg |
329 |
Q |
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| T |
3215157 |
cgtaagtcttaattatccttgttcatataaaacattgaacaggatatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatg |
3215256 |
T |
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| Q |
330 |
gaaacaaccaccaaagattgtcttg |
354 |
Q |
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||||||||||||||||||||||||| |
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| T |
3215257 |
gaaacaaccaccaaagattgtcttg |
3215281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 157 - 354
Target Start/End: Complemental strand, 34012206 - 34012008
Alignment:
| Q |
157 |
attgatagaaaataataagcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcata |
256 |
Q |
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| T |
34012206 |
attgatagaaaataataagcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcata |
34012107 |
T |
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| Q |
257 |
t-aaaacattgaataggatatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatggaaacaaccaccaaagattgtcttg |
354 |
Q |
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| T |
34012106 |
taaaaacattgaacaagatatcattacataaaagataaaagaagaagaaatatagcagcttaacatgactcatggaaacagccaccaaagattgtcttg |
34012008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 34012523 - 34012410
Alignment:
| Q |
33 |
taattgattgacattttttaaattataaatacttcaaaaagtaatattgttaggttggcaaaggagaaagaggacatttactcatacacatgccagaatt |
132 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
34012523 |
taattgattgacattttttaaattataaatacttcaacaagtaatattgttagattgtcaaagcagaaagaggacatttactcatacgcatgccagaatt |
34012424 |
T |
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| Q |
133 |
tgggggagttttga |
146 |
Q |
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|| || |||||||| |
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| T |
34012423 |
tgtggtagttttga |
34012410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 157 - 354
Target Start/End: Complemental strand, 33149548 - 33149350
Alignment:
| Q |
157 |
attgatagaaaataataagcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcata |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33149548 |
attgatagaaaataataagcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcata |
33149449 |
T |
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| Q |
257 |
t-aaaacattgaataggatatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatggaaacaaccaccaaagattgtcttg |
354 |
Q |
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| T |
33149448 |
taaaaacattgaacaagatatcattacataaaagataaaagaagaagaaatatagcagcttaacatgactcatggaaacagccaccaaagattgtcttg |
33149350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 33149865 - 33149752
Alignment:
| Q |
33 |
taattgattgacattttttaaattataaatacttcaaaaagtaatattgttaggttggcaaaggagaaagaggacatttactcatacacatgccagaatt |
132 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
33149865 |
taattgattgacattttttaaattataaatacttcaacaagtaatattgttagattgtcaaagcagaaagaggacatttactcatacgcatgccagaatt |
33149766 |
T |
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| Q |
133 |
tgggggagttttga |
146 |
Q |
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|| || |||||||| |
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| T |
33149765 |
tgtggtagttttga |
33149752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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