View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_33 (Length: 369)

Name: NF2018_low_33
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_33
NF2018_low_33
[»] chr5 (3 HSPs)
chr5 (229-351)||(22008830-22008952)
chr5 (66-159)||(22008667-22008760)
chr5 (1-70)||(22006461-22006530)
[»] chr7 (5 HSPs)
chr7 (26-134)||(9253270-9253378)
chr7 (26-134)||(9316872-9316980)
chr7 (64-134)||(37275936-37276006)
chr7 (231-297)||(9317078-9317144)
chr7 (232-297)||(9253105-9253170)
[»] chr8 (3 HSPs)
chr8 (229-297)||(12664102-12664170)
chr8 (229-297)||(27268027-27268095)
chr8 (229-297)||(6579389-6579457)
[»] chr4 (1 HSPs)
chr4 (229-297)||(29711036-29711104)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 229 - 351
Target Start/End: Original strand, 22008830 - 22008952
Alignment:
Q  229 tcacaatcacttacttcaaataccgaaaccaaaccaacacaattacattctctttagttttatgagaatataacacagtttttgaaaatgacggcgatct 328  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  22008830 tcacaatcacttacttcaaataccgaaaccaaaccgacacaattacattctctttagttttatgagaatatagcacagtttttgaaaatgacggcgattt 22008929  T
Q  329 gaatcatttcgaactcaccgaac 351  Q
    |||||||||||| ||||||||||    
T  22008930 gaatcatttcgatctcaccgaac 22008952  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 22008667 - 22008760
Alignment:
Q  66 cataacatatagacggattatactcatttcacactacaatatacccatctgcataccaaacaatctccttgacttgtgaattcccttggactgt 159  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22008667 cataacatatagacgaattatactcatttcacactacaatatatccatctgcatatcaaacaatctccttgacttgtgaattcccttggactgt 22008760  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22006461 - 22006530
Alignment:
Q  1 tgaacaaatttaaacaacnnnnnnncctattaacaatatatgagtttggaatatttttaccttagcataa 70  Q
    ||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||    
T  22006461 tgaacaaatttaaacaacaaaaaaacctaataacaatatatgagtttggaatatttttaccttagcataa 22006530  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 9253378 - 9253270
Alignment:
Q  26 cctattaacaatatatgagtttggaatatttttacctta-gcataacatatagacggattatactcatttcacactacaatatacccatctgcataccaa 124  Q
    ||||||||||| |||||||||||  ||||||||||| || ||||||  ||| |||||||||||||||||||  ||||||||||  |||||| ||||||||    
T  9253378 cctattaacaa-atatgagtttgacatatttttaccgtaagcataagctatggacggattatactcatttcgtactacaatatctccatctacataccaa 9253280  T
Q  125 acaatctcct 134  Q
     |||||||||    
T  9253279 gcaatctcct 9253270  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 9316872 - 9316980
Alignment:
Q  26 cctattaacaatatatgagtttggaatatttttacctta-gcataacatatagacggattatactcatttcacactacaatatacccatctgcataccaa 124  Q
    ||||||||||| |||||||||||  ||||||||||| || ||||||  ||| |||||||||||||||||||  ||||||||||  |||||| ||||||||    
T  9316872 cctattaacaa-atatgagtttgacatatttttaccgtaagcataagctatggacggattatactcatttcgtactacaatatctccatctacataccaa 9316970  T
Q  125 acaatctcct 134  Q
     |||||||||    
T  9316971 gcaatctcct 9316980  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 37275936 - 37276006
Alignment:
Q  64 agcataacatatagacggattatactcatttcacactacaatatacccatctgcataccaaacaatctcct 134  Q
    |||||||  |||||| |||||||||||||||| ||||||| |||  ||||||||||||||| |||||||||    
T  37275936 agcataagctatagaaggattatactcatttcgcactacagtatctccatctgcataccaagcaatctcct 37276006  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 9317078 - 9317144
Alignment:
Q  231 acaatcacttacttcaaataccgaaaccaaaccaacacaattacattctctttagttttatgagaat 297  Q
    |||||||||||||| | | ||||||||  ||||  |||| || ||||||||||||||||||||||||    
T  9317078 acaatcacttacttgatagaccgaaacttaaccgtcacagtttcattctctttagttttatgagaat 9317144  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 9253170 - 9253105
Alignment:
Q  232 caatcacttacttcaaataccgaaaccaaaccaacacaattacattctctttagttttatgagaat 297  Q
    ||||||||||||| | | ||||||||  ||||  |||| || ||||||||||||||||||||||||    
T  9253170 caatcacttacttgatagaccgaaactgaaccgtcacagtttcattctctttagttttatgagaat 9253105  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 12664102 - 12664170
Alignment:
Q  229 tcacaatcacttacttcaaataccgaaaccaaaccaacacaattacattctctttagttttatgagaat 297  Q
    |||||||||||||||| ||||||| ||| | ||||  |||| |||||||||||||||||||||||||||    
T  12664102 tcacaatcacttacttgaaataccaaaatcgaaccgtcacagttacattctctttagttttatgagaat 12664170  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 27268095 - 27268027
Alignment:
Q  229 tcacaatcacttacttcaaataccgaaaccaaaccaacacaattacattctctttagttttatgagaat 297  Q
    |||||||||||||||| ||| ||| ||| | ||||  |||| ||||||||| |||||||||||||||||    
T  27268095 tcacaatcacttacttgaaagaccaaaatcgaaccgtcacagttacattctatttagttttatgagaat 27268027  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 6579389 - 6579457
Alignment:
Q  229 tcacaatcacttacttcaaataccgaaaccaaaccaacacaattacattctctttagttttatgagaat 297  Q
    |||||||||||||||| ||| ||| ||| | ||||  |||| ||||||| | |||||||||||||||||    
T  6579389 tcacaatcacttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaat 6579457  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 29711036 - 29711104
Alignment:
Q  229 tcacaatcacttacttcaaataccgaaaccaaaccaacacaattacattctctttagttttatgagaat 297  Q
    |||||||||||||||| ||| ||| ||| | ||||  |||| ||||||| | |||||||||||||||||    
T  29711036 tcacaatcacttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaat 29711104  T

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