View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_36 (Length: 353)
Name: NF2018_low_36
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 48012188 - 48011857
Alignment:
| Q |
17 |
atcaacaacgttaataaaatgttccattgttttcactcttttattacatctacctagcctttcttaatttcatcatacactagaaaagtagaaaactctt |
116 |
Q |
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| T |
48012188 |
atcaacaacgttaataaaatgttccattgttttcactcttttattacatgtacctagtctttcttaatttcatcatacactagaaaagtagaaaactctt |
48012089 |
T |
|
| Q |
117 |
ctccatag-ctagaa---------agaa-gaattgaaaaaaggaacatgagtgcatttgattctgaatgtagtagtggatgtgagtcaggttggactcta |
205 |
Q |
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| T |
48012088 |
ttctatatactagaatctataggtagaaagaattgaaaaatg-aacatgagtgcatttgattctgaatgtagtagtggatgtgagtcaggttggactcta |
48011990 |
T |
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| Q |
206 |
taccttgaacattcttatgaagacactagattcataggtggaactgaagggtactatggaaaccaacacaaagacaaaagagtcacaaatgagtattctg |
305 |
Q |
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| T |
48011989 |
taccttgaacattcttatgaagacactagattcataggtggaactgaagggtactatggaaaccaacacaaagacaaaagagtcacaaatgagtattctg |
48011890 |
T |
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| Q |
306 |
aagaaggggtggaagatttgtctatggtctctg |
338 |
Q |
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| T |
48011889 |
aagaaggggtggaagatttgtctatggtttctg |
48011857 |
T |
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