View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_37 (Length: 352)
Name: NF2018_low_37
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 2629739 - 2630106
Alignment:
| Q |
1 |
attggctgccaatgagagtaatactcttcgagattcaaagcaagattttataaatagaagccctaccagtatagggattttagatatcgaagttagatat |
100 |
Q |
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| T |
2629739 |
attggctgccaatgagagtaatactcttcgagattcaaagcaagattttataaatagaagccctaccagtatagggattttagatatcgaagttagatat |
2629838 |
T |
|
| Q |
101 |
tctaaggaaataaaagagaaaaattcagaataatggagaggaaaacactccttggactgagcttcttcctctttgttctcttagctgctcgtaagttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2629839 |
tctaaggaaataaaagagaaaaattcagaataatggagagggaaacactccttggactgagcttcttcctctttgttctcttagctactcgtaagttctt |
2629938 |
T |
|
| Q |
201 |
tt----------------aattagttattatgttttccttttagctgaaaattttatataccttcttgttaaacatatttttaattacattaatatttta |
284 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2629939 |
ttcagatatgattttgtctattagttattatgttttccttttagttgaaaattttatataccttcttgttaaacatatttttaattacattaatatttta |
2630038 |
T |
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| Q |
285 |
agagtaatgttagcaacacta-nnnnnnnnatcaaagaaaaatatgtatgcatcactctctttctctc |
351 |
Q |
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| T |
2630039 |
agagtaatgttagcaacactatttgtttttatcaaagaaaaatatgtatgcatcactctctctctctc |
2630106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 2630142 - 2630256
Alignment:
| Q |
231 |
gaaaattttatataccttcttgttaaacatatttttaattacattaatattttaagagtaatgttagcaacacta-nnnnnnnnatcaaagaaaaatatg |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2630142 |
gaaaattttatataccttcttgttaaacatatttttaattacattaatattttaagagtaatgttagcaacactatttgtttttatcaaagaaaaatatg |
2630241 |
T |
|
| Q |
330 |
tatgcatcactctct |
344 |
Q |
| |
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||||||||| ||||| |
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| T |
2630242 |
tatgcatcaatctct |
2630256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 2624042 - 2624112
Alignment:
| Q |
129 |
aataatggagaggaaaacactccttggactgagcttcttcctctttgttctcttagctgctcgtaagttct |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624042 |
aataatggagaggaaaacactccttggactgagcttcttcctctttgttctcttagctgctcgtaagttct |
2624112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 2635881 - 2635948
Alignment:
| Q |
130 |
ataatggagaggaaaacactccttggactgagcttcttcctctttgttctcttagctgctcgtaagtt |
197 |
Q |
| |
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||||||||||||||||||||| |||| || | |||||||| ||||| |||||| |||||||||||| |
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| T |
2635881 |
ataatggagaggaaaacactcgttggcatgtgtttcttccttattgttttcttagatgctcgtaagtt |
2635948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 2643423 - 2643459
Alignment:
| Q |
161 |
gcttcttcctctttgttctcttagctgctcgtaagtt |
197 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||| |
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| T |
2643423 |
gcttctttctcattgttctcttagctgctcgtaagtt |
2643459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 7884605 - 7884641
Alignment:
| Q |
161 |
gcttcttcctctttgttctcttagctgctcgtaagtt |
197 |
Q |
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||||||| ||| ||||||||||||||||||||||||| |
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| T |
7884605 |
gcttctttctcattgttctcttagctgctcgtaagtt |
7884641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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