View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_38 (Length: 351)
Name: NF2018_low_38
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 27737013 - 27736695
Alignment:
| Q |
18 |
caacctatattgcaacacactttccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27737013 |
caacctatattgcaacacacttcccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
27736914 |
T |
|
| Q |
118 |
ggtgtggaaaaactttgtcaagtgcatcatcataagtctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27736913 |
ggtgtggaaaaactttgtcaagtgcatcatcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagt |
27736814 |
T |
|
| Q |
218 |
cccttgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttctatggggttcctggttcattttatggcagaatttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27736813 |
cccttgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttctatggagttcctggttcattttatggcagaatttt |
27736714 |
T |
|
| Q |
318 |
tccagataatagtttgcat |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27736713 |
tccagataatagtttgcat |
27736695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 5811690 - 5811376
Alignment:
| Q |
22 |
ctatattgcaacacactttccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtg |
121 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| || ||||||||||| | || |
|
|
| T |
5811690 |
ctatactgcaacacacttcctagaagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttg |
5811591 |
T |
|
| Q |
122 |
tggaaaaactttgtcaagtgcatcatcataagtctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtccct |
221 |
Q |
| |
|
| ||||| ||||||| || | | ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| | |||||| |
|
|
| T |
5811590 |
ttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtccct |
5811491 |
T |
|
| Q |
222 |
tgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttctatggggttcctggttcattttatggcagaatttttcca |
321 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| |||| || || |||||||||| ||| |||||||| || |||||| | || || |||||| |
|
|
| T |
5811490 |
tgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatgggtccttgctacttctctggtgttcctggatccttttatagtaggatctttcca |
5811391 |
T |
|
| Q |
322 |
gataatagtttgcat |
336 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
5811390 |
gataaaagtttgcat |
5811376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 32628037 - 32627747
Alignment:
| Q |
30 |
caacacactttccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaa |
129 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||| |||||||||| ||| |||||||| |||||||||| | ||| |||||||||| ||||||||| |
|
|
| T |
32628037 |
caacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaag |
32627938 |
T |
|
| Q |
130 |
ctttgtcaagtgcatcatcataagtctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacacct |
229 |
Q |
| |
|
||||||| | | | ||||||| ||||| ||||||| ||| |||||| ||||||||||||||||||||||||| | |||| | ||||||||||| | |
|
|
| T |
32627937 |
ctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttcaacaccatatttacgtcccttgacattt |
32627838 |
T |
|
| Q |
230 |
tcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttctatggggttcctggttcattttatggcagaatttttcc |
320 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||| |||| || || |||| ||||| || ||||||||||| ||| |||| ||||||||||| |
|
|
| T |
32627837 |
tcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctcaggagttcctggttcctttcatggtagaatttttcc |
32627747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 45 - 336
Target Start/End: Complemental strand, 32704250 - 32703955
Alignment:
| Q |
45 |
aagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcat |
144 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| ||| ||||| | |||||| | ||||||||| |||||| || || | |
|
|
| T |
32704250 |
aagcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagctt |
32704151 |
T |
|
| Q |
145 |
catcataagtctcctgaatataaa----gtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaa |
240 |
Q |
| |
|
||||||| ||||||||||||| | || |||||||| |||||||| || || ||||||||||| ||||| | |||||| ||||| |||||||| || |
|
|
| T |
32704150 |
aatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaat |
32704051 |
T |
|
| Q |
241 |
ctacgtgatgaaatggaaactaaaataggcccgtgctacttctatggggttcctggttcattttatggcagaatttttccagataatagtttgcat |
336 |
Q |
| |
|
|||| | |||||||||||| |||| | || |||||||||| ||||||||| ||||| || |||||||| |||||||| |||| ||||||||| |
|
|
| T |
32704050 |
ctacaggctgaaatggaaaccgaaatggtaccttgctacttctttggggttcccggttccttctatggcaggatttttcctaataaaagtttgcat |
32703955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 32709959 - 32709869
Alignment:
| Q |
46 |
agcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtc |
136 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||||| | |||||||| ||||||| |
|
|
| T |
32709959 |
agcttagcaattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtc |
32709869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 7298036 - 7297906
Alignment:
| Q |
190 |
ggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttctatgggg |
289 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||| ||| ||||||||||| | |||||||| |||||||||| | | |||||||| | ||||| |
|
|
| T |
7298036 |
ggaaatgacttcaacaacatatttaagtcacttgacaactttaaagagaaactgcaagatgaaatcaaaactaaaatgagttcttgctacttttttgggg |
7297937 |
T |
|
| Q |
290 |
ttcctggttcattttatggcagaatttttcc |
320 |
Q |
| |
|
|||||||||| || ||| | ||| ||||||| |
|
|
| T |
7297936 |
ttcctggttctttctatagtagagtttttcc |
7297906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 7293559 - 7293432
Alignment:
| Q |
193 |
aatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttctatggggttc |
292 |
Q |
| |
|
||||||||||||||| | || ||||| ||||| | ||| ||| | ||||||| ||||||||| ||||| |||| |||| |||||||||| ||| |||| |
|
|
| T |
7293559 |
aatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaaatcaaaactgaaatgagcccttgctacttctttggtgttc |
7293460 |
T |
|
| Q |
293 |
ctggttcattttatggcagaatttttcc |
320 |
Q |
| |
|
||||||| || |||| ||| ||||||| |
|
|
| T |
7293459 |
ctggttctttctatgatagagtttttcc |
7293432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 7298192 - 7298111
Alignment:
| Q |
34 |
acactttccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatca |
115 |
Q |
| |
|
||||||| || |||| | ||||||||||| || ||||| |||| ||| ||||||||| |||| ||| ||||||| ||||||| |
|
|
| T |
7298192 |
acacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtggtatcagatattatca |
7298111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 317
Target Start/End: Original strand, 20115787 - 20116061
Alignment:
| Q |
43 |
agaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgc |
142 |
Q |
| |
|
||||| || ||| |||||||||| |||||||||| || |||||||| |||||||||| |||||||||||||| | ||||||||| |||||| || |
|
|
| T |
20115787 |
agaagattcgcagttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaat |
20115886 |
T |
|
| Q |
143 |
atcatcataagtctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaact |
242 |
Q |
| |
|
||||| | |||||||||||| | || | |||||| |||||| | ||||| ||||||||| | |||| ||||||||||||||||||||||| || || |
|
|
| T |
20115887 |
tgaatcatgaatctcctgaatatgatgtctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaagct |
20115986 |
T |
|
| Q |
243 |
acgtgatgaaatggaaactaaaataggcccgtgctacttctatggggttcctggttcattttatggcagaatttt |
317 |
Q |
| |
|
| ||||| |||||| |||||| || || |||||||||| ||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
20115987 |
ttctaatgaattggaaaataaaatgggtccttgctacttctctggtgttcccggttccttttatggcagaatttt |
20116061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 21943872 - 21943673
Alignment:
| Q |
43 |
agaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgc |
142 |
Q |
| |
|
|||||||| || |||||||||||||||| |||| ||| | ||| ||| |||||||||| || || ||||| || | ||||||||| |||||||||| | |
|
|
| T |
21943872 |
agaagcttagccgttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagt |
21943773 |
T |
|
| Q |
143 |
atcatcataagtctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaact |
242 |
Q |
| |
|
||||| | ||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| ||||| |
|
|
| T |
21943772 |
tgaatcatgaatctcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact |
21943673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 21943653 - 21943607
Alignment:
| Q |
274 |
tgctacttctatggggttcctggttcattttatggcagaatttttcc |
320 |
Q |
| |
|
|||||||||| ||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
21943653 |
tgctacttctttggtgttcccggttccttttatggcagaatttttcc |
21943607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 207
Target Start/End: Original strand, 8028972 - 8029124
Alignment:
| Q |
55 |
attgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatcatcataagt |
154 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||| ||||||||||||| ||| |||||||| || || |||||||| |||| ||| |||| ||| |
|
|
| T |
8028972 |
attgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaaattagttgataaactttgccaagaacataatcacgagt |
8029071 |
T |
|
| Q |
155 |
ctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaac |
207 |
Q |
| |
|
|||| ||||| |||| || |||||||||| | || ||||| ||||||||| |
|
|
| T |
8029072 |
ctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaacaac |
8029124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 8029200 - 8029241
Alignment:
| Q |
280 |
ttctatggggttcctggttcattttatggcagaatttttcca |
321 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
8029200 |
ttctatggggctcctggttctttttatggcaggatttttcca |
8029241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University