View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_42 (Length: 342)
Name: NF2018_low_42
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 9003546 - 9003862
Alignment:
| Q |
18 |
atacttatgtatatatttatatagaaaataaattggctaaattgtt--gtttattgcaacgaaatcttaggtgtcgaatatgattggtgatggtggtcaa |
115 |
Q |
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| T |
9003546 |
atacttatgtatatatttatatagaaaataaattggttaaattgttttgtttattgcgacgaaattttaggtgtcgaatatgattggtgatggtggtcaa |
9003645 |
T |
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| Q |
116 |
gaagaaggatgggtggtgtgtaggatattcaagaagaagaatcatctcaaaaccctagacagcccttctggagagggaagaagaagccatcacttgtatg |
215 |
Q |
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| T |
9003646 |
gaagaaggatgggtggtgtgtaggatattcaagaagaagaatcatctcaaaaccctagacagcccttctggagagggaagaagaagccatcacttgtatg |
9003745 |
T |
|
| Q |
216 |
atacttgtgatgaaggagctttggagcaaatacttcaacaaatgggaaggggttgcaaggaagagaattatgaagcaaattacaataataattatggaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9003746 |
atacttgtgatgaaggagctttggagcaaatacttcaacaaatgggaaggggttgcaaggaagagaattatgaagcaaattacaataataattatggaag |
9003845 |
T |
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| Q |
316 |
gtttgctaggccctttg |
332 |
Q |
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|||||||||||| |||| |
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| T |
9003846 |
gtttgctaggccttttg |
9003862 |
T |
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