View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_43 (Length: 338)
Name: NF2018_low_43
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 14844732 - 14844432
Alignment:
| Q |
19 |
tgattagcgtagggcatggtttgaactttgaaccacaagcacaaagacaagcctttttgaggtgttgtccacaagcttttgttgtcatgttgaggaatgt |
118 |
Q |
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| T |
14844732 |
tgattagcgtagggcatggtttgaactttgaaccacaagcacaaagacaagcctttttgaggtgctgtccacaagcttttgttgtcatgttgaggaatgt |
14844633 |
T |
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| Q |
119 |
ctcatgttgaattatgagttggggtcagccgcatgattttccaattgttaatgaaagtatacaaaccacttattcaaaccaacttataattacatggcac |
218 |
Q |
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| T |
14844632 |
ctcatgttgaattatgagttggggtcagccgcatgattttccaattgttaatgaaagtatacaaaccacttattcaaaccaacttataattacatggcac |
14844533 |
T |
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| Q |
219 |
atgattagagtgtttggtatggcgctgtcttaagcaaaatagcagtagaaaaccacgttaccgtggacaatagttttcagcttctgctttttcacggcta |
318 |
Q |
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| T |
14844532 |
atgattagagtgtttggtatggcgctgtcttaagcaaaatagcagtagaaaaccacgttaccgtggaca---------agcttctgctttttcacggcta |
14844442 |
T |
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| Q |
319 |
gtggcctttg |
328 |
Q |
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| T |
14844441 |
gtggcctttg |
14844432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 328
Target Start/End: Complemental strand, 5662230 - 5662121
Alignment:
| Q |
224 |
tagagtgtttggtatggcgctgtcttaagcaaaatagcagtagaaaaccac---gttaccgtgga--caatagttttcagcttctgctttttcacggcta |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||||||||| || |||||||||||||||||| |||||||| |
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| T |
5662230 |
tagagtgtttggtatggcgttgtcttaagcaaaatagcggtagaaaaccgcacagttaccgtggatgtcatgtttttcagcttctgcttttgcacggcta |
5662131 |
T |
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| Q |
319 |
gtggcctttg |
328 |
Q |
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| T |
5662130 |
gtggtctttg |
5662121 |
T |
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