View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_46 (Length: 327)
Name: NF2018_low_46
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 3310829 - 3311145
Alignment:
| Q |
1 |
ctctgtctcttcatgaattatgtgttgtttactcaactcaacagagagagaaagacatgcaacacgtggatagggcatgtcatcagatctcgttaaa--c |
98 |
Q |
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| T |
3310829 |
ctctgtctcttcatgaattatgtgttgtttactcaactcaacagagagagaaagacatgcaacacgtggatagggcatgtcatcagatctcgttaaaaac |
3310928 |
T |
|
| Q |
99 |
tgatgattgatatgtgaggatagagaggagaaatgagtgctgctgcttttgcagattgaactataaactaggtctgagtgagagggttttcaactgtaaa |
198 |
Q |
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|||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3310929 |
tgataactgatatgtgaggatagagaggagaaatgagtgttgctgcttttgcagattgcactataaactaggtctgagtgagagggttttcaactgtaaa |
3311028 |
T |
|
| Q |
199 |
aatatcttcataaatgacaaatatgaggcttggacatggagcagccttttgtacatgttgtgtgtggcgtgtgtgagaggtcaagaaagagacactactc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3311029 |
aatatcttcataaatgacaaatatgaggcttggacatggagcagccttttgtacatgttgtgtgtggcgtgtgtgagaggtcaagaaagagacactactc |
3311128 |
T |
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| Q |
299 |
ttaaatgctcctttgct |
315 |
Q |
| |
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||||||||||||||||| |
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| T |
3311129 |
ttaaatgctcctttgct |
3311145 |
T |
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