View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_49 (Length: 315)
Name: NF2018_low_49
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 302
Target Start/End: Complemental strand, 9719712 - 9719484
Alignment:
| Q |
69 |
gactattttaacaaagtcaaatatagcgtattagttcattccagccatatacacatagtttaccaaggaagcatcctatactttaaataaaattccatgc |
168 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
9719712 |
gactattttaacaaagtcaaatttatcgtattagttcattccagccatatacac--agtttaccagagaagcatcctatacttttaataaatttccatgc |
9719615 |
T |
|
| Q |
169 |
aacttaccatatataatgattttttatcnnnnnnnnnnnnnctacatatatcgaatttgtcnnnnnnnnnnnnttatatatatattgatagaagcgattc |
268 |
Q |
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|||| || ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
9719614 |
aactaactatatataataattttttat---taaaaaaaaaactacatatatcgaatttgtcaaaaaaactaatttatatatatattgatagaagcgatac |
9719518 |
T |
|
| Q |
269 |
caatgaattaaaaacatacaactacactcttata |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
9719517 |
caatgaattaaaaacatacaactacactcttata |
9719484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 302
Target Start/End: Complemental strand, 13585979 - 13585751
Alignment:
| Q |
69 |
gactattttaacaaagtcaaatatagcgtattagttcattccagccatatacacatagtttaccaaggaagcatcctatactttaaataaaattccatgc |
168 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
13585979 |
gactattttaacaaagtcaaatttatcgtattagttcattccagccatatacac--agtttaccagagaagcatcctatacttttaataaatttccatgc |
13585882 |
T |
|
| Q |
169 |
aacttaccatatataatgattttttatcnnnnnnnnnnnnnctacatatatcgaatttgtcnnnnnnnnnnnnttatatatatattgatagaagcgattc |
268 |
Q |
| |
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|||| || ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
13585881 |
aactaactatatataataattttttat---taaaaaaaaaactacatatatcgaatttgtcaaaaaaactaatttatatatatattgatagaagcgatac |
13585785 |
T |
|
| Q |
269 |
caatgaattaaaaacatacaactacactcttata |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
13585784 |
caatgaattaaaaacatacaactacactcttata |
13585751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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