View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_50 (Length: 307)

Name: NF2018_low_50
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_50
NF2018_low_50
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-288)||(8524-8811)


Alignment Details
Target: scaffold0219 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 8524 - 8811
Alignment:
Q  1 ggtactaaaccaaaaccttatcaagaaaacatggtgaaggaaaacaaagtgtggttttatacaacacaactagcaacaagaccaaactcaaaatcatcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8524 ggtactaaaccaaaaccttatcaagaaaacatggtgaaggaaaacaaagtgtggttttatacaacacaactagcaacaagaccaaactcaaaatcatcat 8623  T
Q  101 ttcaatcaataattaaatagactcgatctatttctagagtatccttctttgatgcacattggtaacaaaacctaccaaactaaatcaattatttgaaaat 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8624 ttcaatcaataattaaatagactcggtctatttctagagtatccttctttgatgcacattggtaacaaaacctaccaaactaaatcaattatttgaaaat 8723  T
Q  201 caaaattagctaatttttccgcacacgtgttaccttagcatataagtgagactccaaattgaaaccactaatgatattaacatgattc 288  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8724 caaaattagctaatttttccgcacacgtgttaccttagcgtataagtgagactccaaattgaaaccactaatgatattaacatgattc 8811  T

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