View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_52 (Length: 306)
Name: NF2018_low_52
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 77 - 296
Target Start/End: Original strand, 1716908 - 1717124
Alignment:
| Q |
77 |
ttgttgacgccgctcaaacaagtgcctcatgaagtgtaataccacttttggaattaaatatcagctctaaaactaaagtagattaattggaatcatacat |
176 |
Q |
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| T |
1716908 |
ttgttgaggccgctcaaacaagtgcctcatgaagtgttatatcacttctggaattaaatatcagctctaaaactaaagtagcttaattggaatcatacat |
1717007 |
T |
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| Q |
177 |
acacttctccaagac-agccacaaatactgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctgacaaatatcttcactca |
275 |
Q |
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| T |
1717008 |
----ttctccaaggccagccacaaagactgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctcacaaatatcttcactcc |
1717103 |
T |
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| Q |
276 |
tacacataataatcagaataa |
296 |
Q |
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||||||||||||||||||||| |
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| T |
1717104 |
tacacataataatcagaataa |
1717124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 42221365 - 42221514
Alignment:
| Q |
19 |
aatcttctgctcagtttcatttccatgaaatcaagaacttttaatatgaatgaaagatttgttgacgccgctcaaacaagtgcctcatgaagtgtaatac |
118 |
Q |
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| T |
42221365 |
aatcttctgctcagtttcatttccatgaaatcaagaacttttaatatgaatgaaagatttgttgacgccgctcaaacaagtgcctcatgaagtgtaatat |
42221464 |
T |
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| Q |
119 |
cacttttggaattaaatatcagctctaaaactaaagtagattaattggaa |
168 |
Q |
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| T |
42221465 |
cacttttggaattaaatatcagctctaaaactaaagtagcttaattggaa |
42221514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 42221698 - 42221835
Alignment:
| Q |
160 |
taattggaatcatacatacacttctccaaga-cagccacaaatactgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctg |
258 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221698 |
taattgaaatcatacatacacttctccaagatcagccacaaatactgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctg |
42221797 |
T |
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| Q |
259 |
acaaatatcttcactcatacacataataatcagaataa |
296 |
Q |
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| T |
42221798 |
acaaatatcttcactcatacacataataatcagaataa |
42221835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 11652778 - 11652913
Alignment:
| Q |
21 |
tcttctgctcagtttcatttccatgaaatcaagaacttttaatatgaatgaaagatttgttgacgccgctcaaacaagtgcctcatgaagtg----taat |
116 |
Q |
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|||||| ||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
11652778 |
tcttctactcagtttcatttcccagaaatcatgaatttttattatgaatgaaagatttgttgaggc----taaacaagtgcctcatgaagtgtacttaat |
11652873 |
T |
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| Q |
117 |
accacttttggaattaaatatcagctctaaaactaaagta |
156 |
Q |
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| T |
11652874 |
atcactgttggaaatcaatatcagctatcaaactgaagta |
11652913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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