View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_53 (Length: 301)

Name: NF2018_low_53
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_53
NF2018_low_53
[»] chr5 (2 HSPs)
chr5 (18-286)||(17917366-17917634)
chr5 (97-178)||(22406029-22406110)
[»] chr7 (8 HSPs)
chr7 (18-201)||(48798813-48798996)
chr7 (66-201)||(2081707-2081842)
chr7 (76-178)||(7587724-7587826)
chr7 (76-178)||(16209127-16209229)
chr7 (76-162)||(12324652-12324738)
chr7 (110-178)||(11587277-11587345)
chr7 (78-162)||(21259328-21259412)
chr7 (91-178)||(11522661-11522748)
[»] scaffold0315 (1 HSPs)
scaffold0315 (102-197)||(12327-12422)
[»] chr8 (2 HSPs)
chr8 (199-286)||(18674459-18674548)
chr8 (199-286)||(17281096-17281185)
[»] chr6 (4 HSPs)
chr6 (107-201)||(12448042-12448136)
chr6 (91-201)||(25803401-25803511)
chr6 (93-178)||(19895776-19895861)
chr6 (105-168)||(12040859-12040922)
[»] scaffold0037 (1 HSPs)
scaffold0037 (76-178)||(111505-111607)
[»] chr4 (2 HSPs)
chr4 (78-178)||(16389984-16390084)
chr4 (104-178)||(15701524-15701598)
[»] chr3 (2 HSPs)
chr3 (91-203)||(24194310-24194422)
chr3 (104-178)||(294460-294534)
[»] scaffold0226 (1 HSPs)
scaffold0226 (78-178)||(8778-8878)
[»] scaffold0004 (1 HSPs)
scaffold0004 (96-178)||(356687-356769)
[»] scaffold0190 (1 HSPs)
scaffold0190 (76-177)||(17976-18077)
[»] scaffold0059 (1 HSPs)
scaffold0059 (93-178)||(51356-51441)
[»] chr2 (1 HSPs)
chr2 (102-162)||(21529195-21529255)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 17917366 - 17917634
Alignment:
Q  18 gtcagaacatcagatacaacatcgataagcaacagagcaatggaagaaatgacagagttgatgaaaagaacaatcaatacaaaagtgttcaatgtcatga 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  17917366 gtcagaacatcagatacaacattgataagcaacagagcaatggaagaaatgatagagttgatgaaaagaacaatcaatacaaaggtgttcaatgtcatga 17917465  T
Q  118 atgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaaggaataattgtgtcttggtctgagggggagtgattatgt 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |||    
T  17917466 atgtgaaggttatggacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaaggaatgattgtgtcttggtttgagtgggagtgattctgt 17917565  T
Q  218 gaatgttttgcagttgcaaatgtatatggaaacctctttttcaatatctgtgaatgtttgatggaaggt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17917566 gaatgttttgcagttgcaaatgtatatggaaacctctttttcaatatctgtgaatgtttgatggaaggt 17917634  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 22406029 - 22406110
Alignment:
Q  97 caaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    |||| ||||||||||||||||||||||||| ||||  || |||||||| ||||||||||||||| | ||||| |||||||||    
T  22406029 caaaggtgttcaatgtcatgaatgtgaaggatatggtcatatcagaacagaatgtgctacttttttgaagaaacaaaagaaa 22406110  T

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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 48798813 - 48798996
Alignment:
Q  18 gtcagaacatcagatacaacatcgataagcaacagagcaatggaagaaatgacagagttgatgaaaagaacaatcaatacaaaagtgttcaatgtcatga 117  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||  ||||||||| |||||||||||||||| ||||||||| |||| |||||||||||    
T  48798813 gtcagaacatcagatacaacattgataagcaacataacaatggaaagaatgacagaattgatgaaaagaacaaccaatacaaaggtgtccaatgtcatga 48798912  T
Q  118 atgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaaggaataattgtgtcttggtctga 201  Q
    ||||||||  |||| ||  || |||||||||||||||||||  |||||||| || || || |  || |||||||||||||||||    
T  48798913 atgtgaagagtatggacttattagaactgaatgtgctacttacctcaagaaacagaacaaggatatgattgtgtcttggtctga 48798996  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 2081842 - 2081707
Alignment:
Q  66 atgacagagttgatgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaa 165  Q
    ||||||||| |||||||||||| | ||| |||||| | || ||||| |||||||||||||||||||  || ||||||||||||||||| || ||||||||    
T  2081842 atgacagaggtgatgaaaagaatagtcagtacaaaggagtacaatgccatgaatgtgaaggttatgggcatatcagaactgaatgtgcaacctttctcaa 2081743  T
Q  166 gaagcaaaagaaaggaataattgtgtcttggtctga 201  Q
    ||| |||||||| || || |||||| |||| |||||    
T  2081742 gaaacaaaagaatgggatgattgtggcttgatctga 2081707  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 7587724 - 7587826
Alignment:
Q  76 tgatgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaag 175  Q
    |||||| || |||||||||| |||  | ||||||||||||||||||||||| ||||   ||||||||||||||||||| ||||| |||||||| || |||    
T  7587724 tgatgacaataacaatcaatccaagggagttcaatgtcatgaatgtgaaggatatggttacatcagaactgaatgtgccactttcctcaagaaacagaag 7587823  T
Q  176 aaa 178  Q
    |||    
T  7587824 aaa 7587826  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 16209127 - 16209229
Alignment:
Q  76 tgatgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaag 175  Q
    |||||| ||||||  |||||||||| | ||||||||||||||||||||||||||||  ||||| | ||  |||||||||| |||||| |||||  |||||    
T  16209127 tgatgagaagaactttcaatacaaaggcgttcaatgtcatgaatgtgaaggttatggtcacattaaaatagaatgtgctagttttcttaagaaataaaag 16209226  T
Q  176 aaa 178  Q
    |||    
T  16209227 aaa 16209229  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 12324738 - 12324652
Alignment:
Q  76 tgatgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttct 162  Q
    ||||||||||||   |||||||||| |||||||||||||||| |||||||| ||||  || ||||||||  |||||||  |||||||    
T  12324738 tgatgaaaagaattctcaatacaaaggtgttcaatgtcatgagtgtgaaggatatgggcatatcagaacataatgtgcctcttttct 12324652  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 11587345 - 11587277
Alignment:
Q  110 tgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    |||||||| |||||||| ||||  ||||| ||||| |||||| | |||||| |||||||||||||||||    
T  11587345 tgtcatgagtgtgaaggatatggtcacattagaacagaatgtaccacttttatcaagaagcaaaagaaa 11587277  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 21259412 - 21259328
Alignment:
Q  78 atgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttct 162  Q
    |||| ||||| | |||||||||  ||||| |||||||||||||||||||  |||  ||||||||||| |||||||| || |||||    
T  21259412 atgagaagaatactcaatacaagggtgtttaatgtcatgaatgtgaaggccatggtcacatcagaacagaatgtgccacctttct 21259328  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 11522661 - 11522748
Alignment:
Q  91 tcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    |||||||||| | || |||||||||||||||||||||||||  || || |||   ||||||| ||||||||| ||||| || ||||||    
T  11522661 tcaatacaaaggagtgcaatgtcatgaatgtgaaggttatggtcatattagagtagaatgtgttacttttcttaagaaacagaagaaa 11522748  T

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Target: scaffold0315 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 12327 - 12422
Alignment:
Q  102 gtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaaggaataattgtgtcttggt 197  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12327 gtgtccaatgtcatgaatgtgaaggttatggacacataagaactgaatgtgctacttttctcaagaagcaaaagaaaggaatgattgtgtcttggt 12422  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 18674548 - 18674459
Alignment:
Q  199 tgagggggagtgattatgtgaatgttttgcagttgcaaatgtatatggaaacctcttttt--caatatctgtgaatgtttgatggaaggt 286  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||||||||  | |||||  ||||||||||||||||||||||||||||    
T  18674548 tgagggggagtgattctgtgaatgttctgcaattgcaaatgtatatggaaatttattttttccaatatctgtgaatgtttgatggaaggt 18674459  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 17281185 - 17281096
Alignment:
Q  199 tgagggggagtgattatgtgaatgttttgcagttgcaaatgtatatggaaacctcttttt--caatatctgtgaatgtttgatggaaggt 286  Q
    ||||||||| ||||| |||||||||| ||||||||||| ||||||||||||  | |||||  || ||||||||||||||| |||||||||    
T  17281185 tgagggggattgattctgtgaatgttctgcagttgcaagtgtatatggaaatttattttttccagtatctgtgaatgttttatggaaggt 17281096  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 12448042 - 12448136
Alignment:
Q  107 caatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaaggaataattgtgtcttggtctga 201  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||||  || ||||||||||||||||||||||| || |||||||| ||||||||    
T  12448042 caatgccatgaatgtgaaagttatggtcacatcagaactgaatgtgaaacctttctcaagaagcaaaagaaagggatgattgtgtcctggtctga 12448136  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 25803511 - 25803401
Alignment:
Q  91 tcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaaggaataattgtg 190  Q
    |||||||||| |||||||||| |||||||||||||| ||||  || ||||| || |||||||||||||| || ||||| || |||||| |  |||||||     
T  25803511 tcaatacaaaggtgttcaatgccatgaatgtgaaggatatggtcatatcaggacagaatgtgctactttactaaagaaacagaagaaaagcttaattgtt 25803412  T
Q  191 tcttggtctga 201  Q
    || ||||||||    
T  25803411 tcctggtctga 25803401  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 19895776 - 19895861
Alignment:
Q  93 aatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    |||||||| |||||||||| |||||||||||||| ||||  || || ||||| |||||||| | |||||| ||||| || ||||||    
T  19895776 aatacaaaggtgttcaatgccatgaatgtgaagggtatgggcatattagaacagaatgtgcaaattttctaaagaaacagaagaaa 19895861  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 12040859 - 12040922
Alignment:
Q  105 ttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaa 168  Q
    ||||||||||||| |||||||| ||||  || |||| ||| ||||||||||||||||| |||||    
T  12040859 ttcaatgtcatgagtgtgaaggatatggccatatcataacagaatgtgctacttttctaaagaa 12040922  T

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Target: scaffold0037 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 111505 - 111607
Alignment:
Q  76 tgatgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaag 175  Q
    |||||| ||||||  |||||||||| ||||||||||||||||||||||||| ||||  || ||||| ||  |||||||||||||||| ||||| ||||||    
T  111505 tgatgagaagaactgtcaatacaaaggtgttcaatgtcatgaatgtgaaggatatggccatatcagtacaaaatgtgctacttttctgaagaaacaaaag 111604  T
Q  176 aaa 178  Q
    |||    
T  111605 aaa 111607  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 16390084 - 16389984
Alignment:
Q  78 atgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaa 177  Q
    |||| ||||||  |||||||||| ||||||||||||||||||||||| | ||||| || |||||||| ||||||| ||||||||  ||||| ||||||||    
T  16390084 atgagaagaactctcaatacaaaggtgttcaatgtcatgaatgtgaaagatatgaccatatcagaacagaatgtgttacttttcagaagaaacaaaagaa 16389985  T
Q  178 a 178  Q
    |    
T  16389984 a 16389984  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 15701524 - 15701598
Alignment:
Q  104 gttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    ||||| ||||||||||||||||| |||| |||||| || ||  ||||||| || ||||||||||| |||||||||    
T  15701524 gttcagtgtcatgaatgtgaaggatatgtacacattaggacgaaatgtgccacatttctcaagaaacaaaagaaa 15701598  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 24194422 - 24194310
Alignment:
Q  91 tcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaaggaataattgtg 190  Q
    |||||||||| | || |||||||||||||||||||||||||| || || ||| | ||||||||||||||||| ||||| || |||||| |  ||| ||      
T  24194422 tcaatacaaaggagtgcaatgtcatgaatgtgaaggttatgatcatattagaccagaatgtgctacttttcttaagaaacagaagaaaagcttaactgct 24194323  T
Q  191 tcttggtctgagg 203  Q
    |||||||||||||    
T  24194322 tcttggtctgagg 24194310  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 294534 - 294460
Alignment:
Q  104 gttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    ||||||||||||||||||||||| ||||  ||||| ||||| ||||||||||||| ||| ||||| |||||||||    
T  294534 gttcaatgtcatgaatgtgaaggatatggtcacattagaacagaatgtgctacttatcttaagaaacaaaagaaa 294460  T

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Target: scaffold0226 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 8778 - 8878
Alignment:
Q  78 atgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaa 177  Q
    |||||| ||||  ||| |||||| | ||||||||| ||||||||||||| ||||  || |||||||| ||||||||||||||||| ||||| || |||||    
T  8778 atgaaatgaactctcattacaaaggagttcaatgttatgaatgtgaaggatatggccatatcagaacagaatgtgctacttttctaaagaaacagaagaa 8877  T
Q  178 a 178  Q
    |    
T  8878 a 8878  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 356687 - 356769
Alignment:
Q  96 acaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    ||||| ||||||||||||||||||||||||| ||||  || || ||||| || |||||||||||| | ||||| |||||||||    
T  356687 acaaaggtgttcaatgtcatgaatgtgaaggatatgggcatattagaacagagtgtgctacttttatgaagaaacaaaagaaa 356769  T

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Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 17976 - 18077
Alignment:
Q  76 tgatgaaaagaacaatcaatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaag 175  Q
    |||||||| ||||  ||| |||||| | |||||||||||||||||| |||| |||   || ||||||||  |||||||||||||||| ||||| ||||||    
T  17976 tgatgaaatgaactctcattacaaaggagttcaatgtcatgaatgttaaggatattggcatatcagaacataatgtgctacttttctaaagaaacaaaag 18075  T
Q  176 aa 177  Q
    ||    
T  18076 aa 18077  T

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Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 51356 - 51441
Alignment:
Q  93 aatacaaaagtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttctcaagaagcaaaagaaa 178  Q
    |||||||| ||||||| || |||||||||||||| ||||  || |||||||| |||||||| || ||||| ||||| || ||||||    
T  51356 aatacaaaggtgttcagtgccatgaatgtgaagggtatgggcatatcagaacagaatgtgcaacatttctaaagaaacagaagaaa 51441  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 21529255 - 21529195
Alignment:
Q  102 gtgttcaatgtcatgaatgtgaaggttatgaacacatcagaactgaatgtgctacttttct 162  Q
    ||||||||||||||||||||||||| ||||  || || ||||| |||| || |||||||||    
T  21529255 gtgttcaatgtcatgaatgtgaaggatatggtcatattagaacagaatatgatacttttct 21529195  T

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