View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_57 (Length: 286)
Name: NF2018_low_57
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_57 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 40292121 - 40291985
Alignment:
| Q |
12 |
atcatcaattccaaaagaggttccatggtacctggtgtgtagtttgtttctgtttctctaatgcaatttttgttgttactttcttaaattcaatttctgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40292121 |
atcatcaattccaaaagaggttccatggtacctggtgtgtagtttgtttctgtttctctaatgcaatttttgttgttattttcttaaattcaatttctgt |
40292022 |
T |
|
| Q |
112 |
ccctccttgagccaaaaataggaaatgatagtaaatt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40292021 |
ccctccttgagccaaaaataggaaatgatagtaaatt |
40291985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 40291909 - 40291846
Alignment:
| Q |
205 |
aaggatgacgggactgatcgtgtgcatgtggtgccactgattttgtattacctgctgtaggatc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40291909 |
aaggatgacgggactgatcgtgtgcatgtggtgccactgattttgtattacctgctgaaggatc |
40291846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University