View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_59 (Length: 273)
Name: NF2018_low_59
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 39929509 - 39929760
Alignment:
| Q |
12 |
agagacatacatatatatggatacgctcaattnnnnnnntctgtcaacttattctaannnnnnnn---atcaatttattaattaagaaaatcatagagtg |
108 |
Q |
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| T |
39929509 |
agagacatacatatatatggatacgctcaattaaaaaaatctgtcaacttattctaatttttttttttatcaatttattaattaagaaaatcatagagta |
39929608 |
T |
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| Q |
109 |
caatactttgaatttcaata--gacannnnnnnnnccaaacnnnnnnnnncttcttttaatacaaaaaatagagtacagaacatcatatgaatgagatgt |
206 |
Q |
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| T |
39929609 |
caatactttgaatttcaataaagacatttttttttcaaacaaaacaaaaacttcttttaatacaaaaaatagagtacagaacatcatatgaatgagatgt |
39929708 |
T |
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| Q |
207 |
aagacatgtcaactatgttggcacacaccgcaaaattatctcatgttaaaac |
258 |
Q |
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| T |
39929709 |
aagacatgtcaactatgttggcacgcaccgcaaaattatctcttattaaaac |
39929760 |
T |
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