View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_64 (Length: 258)

Name: NF2018_low_64
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_64
NF2018_low_64
[»] chr7 (35 HSPs)
chr7 (8-245)||(40530347-40530584)
chr7 (74-167)||(44821932-44822025)
chr7 (83-140)||(8089122-8089179)
chr7 (96-144)||(12110356-12110404)
chr7 (88-144)||(20881654-20881710)
chr7 (86-146)||(33678774-33678834)
chr7 (86-157)||(38010697-38010768)
chr7 (73-144)||(46104570-46104641)
chr7 (54-108)||(1422921-1422975)
chr7 (74-140)||(12792697-12792763)
chr7 (18-140)||(27121542-27121663)
chr7 (86-139)||(7521273-7521326)
chr7 (80-157)||(19022595-19022672)
chr7 (88-157)||(37064482-37064551)
chr7 (86-143)||(39967917-39967974)
chr7 (73-142)||(46281143-46281212)
chr7 (56-140)||(39345471-39345555)
chr7 (86-157)||(39907786-39907857)
chr7 (80-127)||(43673020-43673067)
chr7 (74-140)||(4966156-4966222)
chr7 (88-146)||(20526947-20527005)
chr7 (80-126)||(40428569-40428615)
chr7 (86-144)||(40689002-40689060)
chr7 (88-141)||(2825249-2825302)
chr7 (86-139)||(12792579-12792632)
chr7 (80-133)||(34035924-34035977)
chr7 (87-140)||(47130802-47130855)
chr7 (97-141)||(1350269-1350313)
chr7 (83-143)||(9038109-9038169)
chr7 (54-138)||(9423578-9423662)
chr7 (88-144)||(21453290-21453346)
chr7 (85-141)||(25596032-25596088)
chr7 (104-144)||(28340878-28340918)
chr7 (88-140)||(43648240-43648292)
chr7 (163-199)||(45593817-45593853)
[»] chr3 (30 HSPs)
chr3 (80-140)||(39602220-39602280)
chr3 (73-140)||(1217803-1217870)
chr3 (41-139)||(37273135-37273233)
chr3 (85-142)||(20502083-20502140)
chr3 (80-167)||(32064413-32064499)
chr3 (54-145)||(40122737-40122828)
chr3 (73-139)||(41633361-41633427)
chr3 (75-144)||(2719464-2719533)
chr3 (73-126)||(41671324-41671377)
chr3 (80-157)||(52440672-52440749)
chr3 (88-144)||(24280707-24280763)
chr3 (100-144)||(33405197-33405241)
chr3 (86-134)||(35394514-35394562)
chr3 (80-139)||(12985355-12985414)
chr3 (95-138)||(21335677-21335720)
chr3 (88-147)||(32582737-32582796)
chr3 (85-152)||(34924553-34924620)
chr3 (86-140)||(21367667-21367721)
chr3 (86-144)||(28622015-28622073)
chr3 (80-126)||(33883760-33883806)
chr3 (74-140)||(34382942-34383008)
chr3 (86-140)||(36887504-36887558)
chr3 (88-142)||(39980727-39980781)
chr3 (163-205)||(42039089-42039131)
chr3 (86-144)||(50600194-50600252)
chr3 (89-142)||(44747427-44747480)
chr3 (163-203)||(3757980-3758020)
chr3 (88-140)||(25075066-25075118)
chr3 (79-131)||(26478954-26479006)
chr3 (74-138)||(41452525-41452589)
[»] chr1 (42 HSPs)
chr1 (80-144)||(34290232-34290296)
chr1 (86-167)||(7218090-7218171)
chr1 (80-141)||(26779935-26779996)
chr1 (54-140)||(4576805-4576891)
chr1 (74-140)||(45769748-45769814)
chr1 (85-142)||(25479579-25479636)
chr1 (73-138)||(28262622-28262687)
chr1 (73-144)||(3224419-3224490)
chr1 (80-155)||(15558202-15558277)
chr1 (45-123)||(9602636-9602713)
chr1 (87-144)||(2777888-2777945)
chr1 (88-141)||(7137016-7137069)
chr1 (71-140)||(39270426-39270495)
chr1 (163-224)||(42397674-42397735)
chr1 (73-141)||(6231819-6231887)
chr1 (73-201)||(6279338-6279466)
chr1 (54-126)||(19092368-19092439)
chr1 (85-133)||(29270296-29270344)
chr1 (73-144)||(30259489-30259561)
chr1 (88-140)||(49938747-49938799)
chr1 (85-144)||(4700081-4700140)
chr1 (86-141)||(10744300-10744355)
chr1 (33-108)||(11695893-11695968)
chr1 (73-144)||(17420199-17420270)
chr1 (73-140)||(27140478-27140545)
chr1 (59-157)||(16981925-16982023)
chr1 (88-142)||(24915069-24915123)
chr1 (86-140)||(38882928-38882981)
chr1 (86-144)||(45975686-45975744)
chr1 (80-149)||(5887004-5887073)
chr1 (80-141)||(6102153-6102214)
chr1 (170-203)||(15489365-15489398)
chr1 (87-144)||(34952211-34952268)
chr1 (73-106)||(36581620-36581653)
chr1 (95-144)||(44422695-44422744)
chr1 (95-144)||(49888763-49888812)
chr1 (80-144)||(3215717-3215781)
chr1 (80-144)||(5592695-5592759)
chr1 (43-139)||(10199381-10199477)
chr1 (88-144)||(27820355-27820411)
chr1 (73-141)||(35017575-35017643)
chr1 (86-138)||(43332486-43332538)
[»] chr8 (28 HSPs)
chr8 (80-159)||(30389080-30389159)
chr8 (79-143)||(11745661-11745725)
chr8 (60-140)||(30277235-30277315)
chr8 (79-153)||(4762496-4762570)
chr8 (73-167)||(6509306-6509400)
chr8 (86-144)||(31862489-31862547)
chr8 (88-144)||(1433544-1433600)
chr8 (24-120)||(6950342-6950438)
chr8 (88-144)||(30013214-30013270)
chr8 (88-140)||(35749588-35749640)
chr8 (75-142)||(4558796-4558863)
chr8 (86-141)||(14247240-14247295)
chr8 (86-144)||(8062325-8062383)
chr8 (41-131)||(9540967-9541057)
chr8 (95-153)||(10075576-10075634)
chr8 (86-144)||(18931314-18931372)
chr8 (86-203)||(26716454-26716574)
chr8 (88-142)||(26771263-26771317)
chr8 (88-142)||(27028829-27028883)
chr8 (95-144)||(5227531-5227580)
chr8 (74-143)||(11183542-11183611)
chr8 (48-157)||(12361175-12361284)
chr8 (73-138)||(26473755-26473820)
chr8 (23-144)||(39551162-39551283)
chr8 (115-203)||(1561211-1561299)
chr8 (88-140)||(8060669-8060721)
chr8 (24-140)||(11569411-11569527)
chr8 (86-134)||(20672756-20672804)
[»] chr5 (28 HSPs)
chr5 (73-140)||(41957454-41957521)
chr5 (75-144)||(12425567-12425636)
chr5 (80-140)||(14182391-14182450)
chr5 (73-141)||(25705662-25705730)
chr5 (61-140)||(18875361-18875440)
chr5 (86-140)||(32197720-32197774)
chr5 (74-155)||(16889720-16889801)
chr5 (73-157)||(1550880-1550964)
chr5 (80-140)||(3237093-3237153)
chr5 (73-153)||(18704039-18704119)
chr5 (77-143)||(18286788-18286854)
chr5 (86-159)||(4014440-4014513)
chr5 (85-138)||(13604864-13604917)
chr5 (86-139)||(17258899-17258952)
chr5 (60-140)||(11707055-11707135)
chr5 (73-145)||(14674903-14674975)
chr5 (29-141)||(26515103-26515215)
chr5 (88-144)||(32172649-32172705)
chr5 (86-145)||(7984964-7985023)
chr5 (86-157)||(9202764-9202835)
chr5 (88-142)||(6593297-6593351)
chr5 (75-140)||(7319013-7319078)
chr5 (95-144)||(39105460-39105509)
chr5 (24-100)||(4273331-4273407)
chr5 (80-140)||(8334571-8334631)
chr5 (86-138)||(21768213-21768265)
chr5 (24-140)||(28586720-28586836)
chr5 (74-126)||(42582510-42582562)
[»] chr4 (29 HSPs)
chr4 (73-157)||(20907330-20907414)
chr4 (89-144)||(35571650-35571705)
chr4 (86-144)||(29601024-29601082)
chr4 (73-142)||(6978965-6979034)
chr4 (54-155)||(24929478-24929579)
chr4 (88-144)||(44319945-44320001)
chr4 (73-140)||(11264301-11264368)
chr4 (86-157)||(51630094-51630165)
chr4 (87-157)||(24370970-24371040)
chr4 (75-157)||(40174546-40174628)
chr4 (87-140)||(47800623-47800676)
chr4 (81-157)||(3155586-3155662)
chr4 (85-157)||(28300314-28300386)
chr4 (88-127)||(28614826-28614865)
chr4 (80-157)||(25332757-25332835)
chr4 (88-142)||(39691161-39691215)
chr4 (88-157)||(2996556-2996625)
chr4 (59-144)||(7693999-7694084)
chr4 (71-144)||(8468944-8469017)
chr4 (96-133)||(51044506-51044543)
chr4 (67-126)||(2977973-2978033)
chr4 (88-144)||(20031745-20031801)
chr4 (88-144)||(23459624-23459680)
chr4 (41-144)||(27043800-27043904)
chr4 (85-157)||(47118980-47119052)
chr4 (80-144)||(49202641-49202705)
chr4 (32-144)||(50799992-50800103)
chr4 (88-140)||(52259631-52259683)
chr4 (80-140)||(53138037-53138097)
[»] chr2 (29 HSPs)
chr2 (76-144)||(13869101-13869169)
chr2 (73-144)||(680499-680570)
chr2 (91-141)||(10884542-10884592)
chr2 (77-143)||(13736300-13736366)
chr2 (89-144)||(9556235-9556290)
chr2 (86-157)||(22681201-22681272)
chr2 (75-126)||(35993385-35993436)
chr2 (73-203)||(41032958-41033088)
chr2 (73-144)||(42621378-42621449)
chr2 (80-142)||(36415683-36415745)
chr2 (87-140)||(4026817-4026870)
chr2 (88-141)||(9174814-9174867)
chr2 (88-157)||(18066111-18066180)
chr2 (88-144)||(18179258-18179314)
chr2 (75-139)||(40279408-40279472)
chr2 (163-203)||(41039744-41039784)
chr2 (85-144)||(9877954-9878013)
chr2 (81-140)||(44590034-44590093)
chr2 (86-144)||(26626869-26626927)
chr2 (73-143)||(32821806-32821876)
chr2 (88-157)||(29316793-29316862)
chr2 (80-145)||(40682405-40682469)
chr2 (80-144)||(1493523-1493587)
chr2 (54-142)||(12215805-12215893)
chr2 (80-143)||(36236452-36236513)
chr2 (53-101)||(37034061-37034109)
chr2 (80-136)||(42457952-42458008)
chr2 (80-144)||(43141867-43141931)
chr2 (88-140)||(43985021-43985073)
[»] chr6 (20 HSPs)
chr6 (73-144)||(281851-281922)
chr6 (74-110)||(1344886-1344922)
chr6 (56-140)||(6647387-6647471)
chr6 (86-144)||(9093572-9093630)
chr6 (86-144)||(31624086-31624144)
chr6 (75-157)||(31671079-31671161)
chr6 (74-167)||(4006687-4006780)
chr6 (86-142)||(835265-835321)
chr6 (88-144)||(7148662-7148718)
chr6 (71-127)||(9833111-9833167)
chr6 (74-133)||(3217125-3217184)
chr6 (85-144)||(21024207-21024266)
chr6 (182-224)||(33818084-33818126)
chr6 (75-108)||(2023391-2023424)
chr6 (80-157)||(14492285-14492362)
chr6 (88-157)||(25100026-25100095)
chr6 (80-144)||(8035158-8035222)
chr6 (73-133)||(31583686-31583746)
chr6 (163-203)||(31668783-31668823)
chr6 (163-203)||(33737515-33737555)
[»] scaffold0020 (1 HSPs)
scaffold0020 (56-140)||(159959-160043)
[»] scaffold0091 (1 HSPs)
scaffold0091 (95-144)||(6948-6997)
[»] scaffold0024 (1 HSPs)
scaffold0024 (41-101)||(27615-27675)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 40530347 - 40530584
Alignment:
Q  8 gacatcatcaactactataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataa 107  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40530347 gacattatccactactataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataa 40530446  T
Q  108 gttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttatgttttgtcacacaaatagcttatacataagcacttagtct 207  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40530447 gttctttaggatagcttattaaaacaacttatagcttttgtaaaaacaatctgtctttatgttttgtcacacaaatagcttatacataagcacttagtct 40530546  T
Q  208 ttaaacacttaattaagctgtttttccaactagagcct 245  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40530547 ttaaacacttaattaagctgtttttccaactagagcct 40530584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 44822025 - 44821932
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttat 167  Q
    ||||| |||| ||||||||||||||||||||||||||||  || ||||||||| ||||||||||||| ||| |  ||||||||| || ||||||    
T  44822025 atgtcaataagttgttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaatttgactttat 44821932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 8089122 - 8089179
Alignment:
Q  83 aattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||| ||||||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  8089122 aattgatttcaacttatttccataatttctttatgatagcttatcaaaacagcttata 8089179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 12110404 - 12110356
Alignment:
Q  96 ttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||||||| | |||||||||| |||||||||||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacagcttatagctt 12110356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 20881654 - 20881710
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| ||||||||||||||||||||| ||||| |||| |||||| ||||||||||    
T  20881654 ttttcagcttattttcataagttctttaagatagtttatgaaaacaacttatagctt 20881710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 33678834 - 33678774
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctttt 146  Q
    ||||||||||||||||||| ||||| |  | |||||||||| |||||||||||||||||||    
T  33678834 tgttttcaacttattttcacaagttttccaagatagcttatgaaaacagcttatagctttt 33678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 38010768 - 38010697
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||| | ||||||| |||||||||| |||||||| |||| ||||||||||||||||| | | ||||||||    
T  38010768 tgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaat 38010697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 46104570 - 46104641
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| ||||| ||||| || |||||||||||||| |||| || ||||||||| |||||| ||||||||||    
T  46104570 catgtcaataaaatgtttccagcttattttcataagctcttcagcatagcttatgaaaacaacttatagctt 46104641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 1422975 - 1422921
Alignment:
Q  54 ttatggaaatagtttagggcatgtctataaattgttttcaacttattttcataag 108  Q
    ||||| |||||||||| | || ||||||||||||||||||| |||||||||||||    
T  1422975 ttatgaaaatagtttatgacaagtctataaattgttttcaatttattttcataag 1422921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 12792697 - 12792763
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||||||| |||||||| ||||||| | |||| |||| || ||||||||| |||||||||||||    
T  12792697 atgtctataaactgttttcagcttatttccgtaagctcttcagaatagcttatcaaaacagcttata 12792763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 27121542 - 27121663
Alignment:
Q  18 actactataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttagg 117  Q
    |||| ||||| ||| |||||| ||||||||||||  |||||||||||| ||| | ||| || ||||  |||||||||||| ||| |||||| |||  ||     
T  27121542 actaatataagcatctgtgagattgtttgggagagtttatggaaatagcttatgacat-tcaataagctgttttcaacttgtttccataagctctcaagt 27121640  T
Q  118 atagcttattaaaacagcttata 140  Q
    |||||||||| | ||||||||||    
T  27121641 atagcttatttacacagcttata 27121663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 7521326 - 7521273
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    |||||||| |||||||||| ||| ||| |||||||| |||||||||||||||||    
T  7521326 tgttttcagcttattttcagaagctctctaggatagtttattaaaacagcttat 7521273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 19022595 - 19022672
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||| |||| |||||||||||||||||||||||  |  ||||||||| |||||| |||||||| ||| | ||||||||    
T  19022595 ataagttgtcttcaacttattttcataagttctccaatatagcttataaaaacaacttatagcatttattaaaacaat 19022672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 37064482 - 37064551
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||| ||||||||||||||| || ||  ||||||||  ||||||||||||||| | ||||||||||||    
T  37064482 ttttcagcttattttcataagtcctctaaaatagcttacgaaaacagcttatagcatatgtaaaaacaat 37064551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 39967974 - 39967917
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    |||||||||||||||||||| |||||| |  |||||||||| |||||| |||||||||    
T  39967974 tgttttcaacttattttcattagttctctcagatagcttatgaaaacaacttatagct 39967917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 46281143 - 46281212
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    ||||||||||||||||||||| |||||||  |||||  ||  || ||||||||| |||||||||||||||    
T  46281143 catgtctataaattgttttcagcttatttatataagccctccagaatagcttataaaaacagcttatagc 46281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 39345555 - 39345471
Alignment:
Q  56 atggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||| |||||| | |||||| |||| ||| ||||| ||||||| |||||| || | |||||||||| | |||||||||||||    
T  39345555 atggaaacagtttatgacatgtccataagttgctttcagcttatttccataaggtcgtcaggatagcttttgaaaacagcttata 39345471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 39907857 - 39907786
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||||| ||||||||||| |||||| || ||||| |||| ||||||| ||||||||| |  |||||||||    
T  39907857 tgttttcagcttattttcattagttctctaagatagtttatgaaaacagtttatagcttatacaaaaacaat 39907786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 43673020 - 43673067
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttatt 127  Q
    |||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  43673020 ataagttgttttcaacttactttgataagctctttaggatagcttatt 43673067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 4966222 - 4966156
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||| |||| |||||||||  |||||| |||||| |||| ||||| |||||| |||||||||||||    
T  4966222 atgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttata 4966156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 20526947 - 20527005
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctttt 146  Q
    |||||| ||||||||||||||||||  |  ||||||||| |||||||||| ||||||||    
T  20526947 ttttcagcttattttcataagttctacactatagcttatgaaaacagcttgtagctttt 20527005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 40428615 - 40428569
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttat 126  Q
    ||||| |||||||| ||||||| |||||| |||||||||||||||||    
T  40428615 ataaactgttttcagcttatttccataagctctttaggatagcttat 40428569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 40689002 - 40689060
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| | |||||||||||||||| |  |||||||||||| || ||||||||||||||    
T  40689002 tgttttgagcttattttcataagttatccaggatagcttatgaacacagcttatagctt 40689060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 2825249 - 2825302
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||| ||||||| |||||||||| ||||||||||| | |||||| |||||||    
T  2825249 ttttcagcttatttccataagttctctaggatagcttgtgaaaacaacttatag 2825302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 12792579 - 12792632
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    |||||||| |||||||||||||| |||| | |||||||||| |||| |||||||    
T  12792579 tgttttcagcttattttcataagctcttcaagatagcttatgaaaatagcttat 12792632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 34035977 - 34035924
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaaca 133  Q
    |||| |||||||||||||||||||  ||||||| || |||||||||| ||||||    
T  34035977 ataagttgttttcaacttattttcgcaagttctctaagatagcttatgaaaaca 34035924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 47130802 - 47130855
Alignment:
Q  87 gttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||||||||||| |||||||  | |||||||||| |||||| ||||||    
T  47130802 gttttcaacttattttcacaagttctccaagatagcttatgaaaacaacttata 47130855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 1350269 - 1350313
Alignment:
Q  97 tattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||||||||| |||| ||||||| |||| ||||||||||||||    
T  1350269 tattttcataagctcttcaggatagtttatgaaaacagcttatag 1350313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 9038169 - 9038109
Alignment:
Q  83 aattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    ||||||||||| |||||||||| |||||||  | ||||| |||| ||||||| ||||||||    
T  9038169 aattgttttcagcttattttcacaagttctccatgatagtttatgaaaacagtttatagct 9038109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 9423578 - 9423662
Alignment:
Q  54 ttatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    ||||||||| | |||| | |||||  |||| ||||||||| |||||||  | ||| |||  ||||||||||||||||||||||||    
T  9423578 ttatggaaacaatttatgacatgttcataagttgttttcagcttatttcaagaagctctccaggatagcttattaaaacagctta 9423662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 21453346 - 21453290
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| ||||| ||||| || ||| ||||||||||||| ||||||| |||||||||    
T  21453346 ttttcagcttatcttcattagctctctaggatagcttatgaaaacagtttatagctt 21453290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 25596088 - 25596032
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||||||||||||||||||||| |||  | |||||||||| |||| || ||||||    
T  25596088 ttgttttcaacttattttcataagctctccaagatagcttatgaaaagagtttatag 25596032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 28340878 - 28340918
Alignment:
Q  104 ataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  28340878 ataagctctctaggatagcttatgaaaacagcttatagctt 28340918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 43648292 - 43648240
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||||||||||||  ||||  | |||||||||| |||||||||||||    
T  43648292 ttttcaacttattttcatattttctccaagatagcttatgaaaacagcttata 43648240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 45593817 - 45593853
Alignment:
Q  163 tttatgttttgtcacacaaatagcttatacataagca 199  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  45593817 tttatgttttgttacagaaatagcttatacataagca 45593853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 39602220 - 39602280
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||||||||||||||||||||||||||  | |||||||||| |||||||||||||    
T  39602220 ataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttata 39602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 1217803 - 1217870
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| |||| ||||||||| |||| |||||||||||||  |||||||||||| |||||||||||||    
T  1217803 catgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttata 1217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 37273233 - 37273135
Alignment:
Q  41 tgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    |||||||||||  ||||||||| |  ||| | |||||| |||| ||||||||||||||||| ||||||||||  | |||||||||| ||||||| ||||    
T  37273233 tgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacagtttat 37273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 20502083 - 20502140
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    ||||||||| |||||| ||||||| |||| |||||||||||| |||||||||||||||    
T  20502083 ttgttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttatagc 20502140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 32064499 - 32064413
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttat 167  Q
    ||||| ||||||||||||||||||||||| |||||||||||| |||| || ||| | ||||| |||| |||||| ||| || ||||||    
T  32064499 ataaactgttttcaacttattttcataagctctttaggatagtttatgaacacaacatatag-ttttataaaaataatttgactttat 32064413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 40122737 - 40122828
Alignment:
Q  54 ttatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttt 145  Q
    ||||| |||||||||| | ||| ||||||| ||||||| | ||||||| ||| |  | ||||||||||||||| |||||| |||||||||||    
T  40122737 ttatgaaaatagtttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagcttt 40122828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 41633427 - 41633361
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    ||||||||||||||||||||| |||||||||||||| |||  |  |||||| || ||||||||||||    
T  41633427 catgtctataaattgttttcagcttattttcataagctctccaaaatagctgatgaaaacagcttat 41633361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 2719533 - 2719464
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| |||| ||||| ||| ||||||||||||||||||  | |||||||||| ||||||| |||||||||    
T  2719533 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttatagctt 2719464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 41671377 - 41671324
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttat 126  Q
    ||||||||||| ||||||||||||||||||||||| || || | ||||||||||    
T  41671377 catgtctataagttgttttcaacttattttcataaatttttcaagatagcttat 41671324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 52440672 - 52440749
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||| |||||||||||| |||||||||||||||| | ||||  |||| |||| |||||||||||| | | ||||||||    
T  52440672 ataagttgttttcaactaattttcataagttcttcaagataaattatgaaaatagcttatagcttatttgaaaacaat 52440749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 24280763 - 24280707
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||||||||||||||| |||  | |||||||||| | |||||||||||||||    
T  24280763 ttttcaacttattttcataagctctccatgatagcttatgacaacagcttatagctt 24280707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 33405197 - 33405241
Alignment:
Q  100 tttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||| | |||||||||| |||||||||||||||||    
T  33405197 tttcataagttcttcaagatagcttatgaaaacagcttatagctt 33405241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 35394514 - 35394562
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacag 134  Q
    |||||||||||||||||||||| ||||| | |||||||||| |||||||    
T  35394514 tgttttcaacttattttcataaattcttcaagatagcttatgaaaacag 35394562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 12985355 - 12985414
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    |||| ||||||||  ||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  12985355 ataagttgttttcggcttatttccataagttcttgaggatagcttatgaaaacagtttat 12985414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 21335720 - 21335677
Alignment:
Q  95 cttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||    
T  21335720 cttattttcataagttctctagtatagcttatgaaaacagctta 21335677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 32582796 - 32582737
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttg 147  Q
    |||||||||||||| ||||||||||  |  ||||||||| |||||||||| |||||||||    
T  32582796 ttttcaacttatttccataagttctccaaaatagcttatgaaaacagcttgtagcttttg 32582737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 34924553 - 34924620
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaa 152  Q
    ||||||||| |||||||||||||| ||| || |||||||||| |||| |||| |||| |||| |||||    
T  34924553 ttgttttcagcttattttcataagctctctaagatagcttatgaaaatagctcatagtttttataaaa 34924620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 21367721 - 21367667
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||| ||||||||||||||||||  | |||||||||| |||||| ||||||    
T  21367721 tgttttcagcttattttcataagttctccaagatagcttatgaaaacaacttata 21367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 28622015 - 28622073
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||  |||||||||||||||||  | ||||| |||| |||||||||||||||||    
T  28622015 tgttttcaggttattttcataagttctcgaagatagtttatgaaaacagcttatagctt 28622073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 33883760 - 33883806
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttat 126  Q
    |||| ||||||||| |||||||||||||||||| || ||||||||||    
T  33883760 ataagttgttttcagcttattttcataagttctctaagatagcttat 33883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 34383008 - 34382942
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||| ||||||||| ||||||||| |||| | || |||||||||||| |||| | ||||||    
T  34383008 atgtctataagttgttttcatcttattttcttaagcttttcaggatagcttatgaaaagaacttata 34382942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 36887558 - 36887504
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||| ||||||||||||||||||| | ||| |||||| |||||| ||||||    
T  36887558 tgttttcagcttattttcataagttcttcaagatggcttatgaaaacaacttata 36887504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 39980781 - 39980727
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||||||||||||||||||||||||  |  ||||||||| |||||| ||||||||    
T  39980781 ttttcaacttattttcataagttctccaatatagcttataaaaacaacttatagc 39980727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 42039131 - 42039089
Alignment:
Q  163 tttatgttttgtcacacaaatagcttatacataagcacttagt 205  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||    
T  42039131 tttattttttgttacagaaatagcttatacataagcacttagt 42039089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 50600194 - 50600252
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| ||||||||||||||||||  |  |||||| || |||||||||||||||||    
T  50600194 tgttttcagcttattttcataagttctccaatatagctgatgaaaacagcttatagctt 50600252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 44747427 - 44747480
Alignment:
Q  89 tttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    ||||| |||||||||||||||| |  | |||||||||| |||||||||||||||    
T  44747427 tttcagcttattttcataagttttccaagatagcttatgaaaacagcttatagc 44747480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 3758020 - 3757980
Alignment:
Q  163 tttatgttttgtcacacaaatagcttatacataagcactta 203  Q
    ||||| |||||| ||| ||||||||||||||||||||||||    
T  3758020 tttatattttgttacaaaaatagcttatacataagcactta 3757980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 25075118 - 25075066
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| ||||||||||| |||||| || |||||||||| |||| ||||||||    
T  25075118 ttttcagcttattttcattagttctctatgatagcttatgaaaagagcttata 25075066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 26479006 - 26478954
Alignment:
Q  79 tataaattgttttcaacttattttcataagttctttaggatagcttattaaaa 131  Q
    ||||| ||||||| ||||||||||||||   ||||||||||||||||| ||||    
T  26479006 tataagttgtttttaacttattttcatatactctttaggatagcttatgaaaa 26478954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 41452589 - 41452525
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    ||||||||||  |||||||| ||||||| || || ||||  |||||||||||| |||||||||||    
T  41452589 atgtctataagctgttttcaccttatttccacaacttctccaggatagcttatgaaaacagctta 41452525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 34290296 - 34290232
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| ||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  34290296 ataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagctt 34290232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 7218090 - 7218171
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttat 167  Q
    |||||||||||||||||||||||||||  ||||||| |||| |||||| |||||||||| | | |||||||| || ||||||    
T  7218090 tgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttat 7218171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 26779935 - 26779996
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||    
T  26779935 ataagttgttttcaacttattttcataagttcttcaagatagcttatgaaaacaacttatag 26779996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 4576891 - 4576805
Alignment:
Q  54 ttatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||| |||||||||| | ||||| ||||| |||| |||| |||||||||||||||| || |  ||||||||| |||||||||||||    
T  4576891 ttatgaaaatagtttatgacatgtttataagttgtgttcagcttattttcataagttattcaatatagcttatgaaaacagcttata 4576805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 45769748 - 45769814
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||| ||| ||| | ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  45769748 atgtctataagttgattttatcttattttcataagttcttcaggatagcttatcaaaatagcttata 45769814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 25479636 - 25479579
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    ||||||||| |||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  25479636 ttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagc 25479579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 28262622 - 28262687
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    |||||| |||||||||||| | ||||||| |||||||||| ||||||| ||||| |||||||||||    
T  28262622 catgtccataaattgtttttagcttatttccataagttctataggataacttatgaaaacagctta 28262687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 3224490 - 3224419
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| |||| ||||| ||| |||||||||||||||||| ||| ||||||||| |||||| | ||||||||    
T  3224490 catgtccataagttgttctcagcttattttcataagttctctagaatagcttataaaaacaccctatagctt 3224419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 15558277 - 15558202
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaaca 155  Q
    |||| ||||||||| |||||||  ||||||||| ||||||| ||||| ||||||||||||| |||||  |||||||    
T  15558277 ataagttgttttcagcttatttctataagttctctaggatatcttatgaaaacagcttataacttttacaaaaaca 15558202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 9602636 - 9602713
Alignment:
Q  45 tgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagct 123  Q
    |||||||  |||||||||||| ||| | |||||  ||||  |||||||||||||||||||||||||||| |||||||||    
T  9602636 tgggagagtttatggaaatagcttatgacatgtg-ataatctgttttcaacttattttcataagttcttcaggatagct 9602713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 2777945 - 2777888
Alignment:
Q  87 gttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||| ||||||||||||||||||  | | || |||||||||||||||||||||||    
T  2777945 gttttcagcttattttcataagttctccaagttaacttattaaaacagcttatagctt 2777888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 7137016 - 7137069
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||| ||||||||||||||||||  | |||||||||| ||||||||||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 39270426 - 39270495
Alignment:
Q  71 ggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||| ||||  ||||||||||||||||||||| | ||| || | |||||||| |||||||||||||    
T  39270426 ggcatgtccataagctgttttcaacttattttcatatgctctctatggtagcttatgaaaacagcttata 39270495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 42397735 - 42397674
Alignment:
Q  163 tttatgttttgtcacacaaatagcttatacataagcacttagtctttaaacacttaattaag 224  Q
    |||||||||||| ||| ||||||||||||||||||||||||    |||||| ||||||||||    
T  42397735 tttatgttttgttacagaaatagcttatacataagcacttataagttaaacgcttaattaag 42397674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 6231819 - 6231887
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||| ||||| |||||||| |||||||  |||||||||| ||| |||||||  ||||||||||||||    
T  6231819 catgtccataaactgttttcagcttatttctataagttcttcaggttagcttacgaaaacagcttatag 6231887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 6279466 - 6279338
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttatgtttt 172  Q
    |||||| |||| ||||||||| | ||||| |||||| ||| ||||||||||||| |||| || ||| ||||| |   |||||||| ||| ||||| || |    
T  6279466 catgtccataagttgttttcagcgtatttccataagctctctaggatagcttatgaaaatagtttaaagcttatacgaaaacaatttgtttttattttat 6279367  T
Q  173 gtcacacaaatagcttatacataagcact 201  Q
     ||  | || |||||||||||||||||||    
T  6279366 ctcctaaaattagcttatacataagcact 6279338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 19092368 - 19092439
Alignment:
Q  54 ttatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttat 126  Q
    ||||| ||||||| || | |||||| ||||| |||||||| |||||||||||||| |||| ||||||||||||    
T  19092368 ttatgaaaatagtctatgacatgtc-ataaactgttttcaccttattttcataagctcttcaggatagcttat 19092439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 29270296 - 29270344
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaaca 133  Q
    |||||||||||||||||| |||||||||| | |||||||||| ||||||    
T  29270296 ttgttttcaacttattttgataagttcttcatgatagcttataaaaaca 29270344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 30259489 - 30259561
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagc-ttattaaaacagcttatagctt 144  Q
    |||||| |||||||||||||||||||||| |||||| |||  | |||||| ||||  ||||||||||||||||    
T  30259489 catgtcaataaattgttttcaacttatttccataagctctccatgatagctttatgcaaacagcttatagctt 30259561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 49938799 - 49938747
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||||||||||||||||||||| ||  ||||||||| |||||| ||||||    
T  49938799 ttttcaacttattttcataagttctctaatatagcttataaaaacaacttata 49938747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 4700081 - 4700140
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||| |||||||||||||| |||  ||||||| |||| ||||||| |||||||||    
T  4700081 ttgttttcagcttattttcataagctctccaggatagtttataaaaacagtttatagctt 4700140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 10744355 - 10744300
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||||| |||||||| ||||||||| || || ||||||| ||||||||||||||    
T  10744355 tgttttcatcttatttttataagttctctaagacagcttatgaaaacagcttatag 10744300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 11695968 - 11695893
Alignment:
Q  33 tgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataag 108  Q
    |||||| |||||||||| |   |||||||| |||||| | |||||| ||||  |||||||||||||||||||||||    
T  11695968 tgtgagattgtttgggaaagcatatggaaacagtttatgacatgtccataagctgttttcaacttattttcataag 11695893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 17420270 - 17420199
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| |||||||||||||||||||||| ||| |||| | |  |||||||||  ||||||| |||||||||    
T  17420270 catgtccataaattgttttcaacttatttccattagttttctgagatagcttacgaaaacagtttatagctt 17420199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 27140545 - 27140478
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| |||| ||||||||| ||||||| |||||| |||  | |||||||||| |||||||||||||    
T  27140545 catgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 16981925 - 16982023
Alignment:
Q  59 gaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||||||||| | |||||| |||| ||||||| | |||||||  ||||| |||  | |||||||||| | |||| |||| || |||||||||||||||    
T  16981925 gaaatagtttatgacatgtccataagttgtttttagcttatttatataagctctccatgatagcttatgataacatcttaaagtttttgtaaaaacaat 16982023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 24915069 - 24915123
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    ||||||||||||||||| |||||||  | || ||||||| |||||||||||||||    
T  24915069 ttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagc 24915123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 38882928 - 38882981
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||||||||||||||||||||||| || || ||||||| |||||| ||||||    
T  38882928 tgttttcaacttattttcataagttctcta-gagagcttatgaaaacaacttata 38882981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 45975744 - 45975686
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| ||||||||||||| ||||  | |||||||||| |||||||||| ||||||    
T  45975744 tgttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagctt 45975686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 5887004 - 5887073
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgta 149  Q
    |||| ||||||||| ||||||||| ||||||||  | ||| ||||||  |||||||||||| ||||||||    
T  5887004 ataagttgttttcagcttattttcgtaagttctccaagatggcttatagaaacagcttataacttttgta 5887073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 6102214 - 6102153
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||||||||||| ||||||| ||||| ||||    |||||||||| ||||||||||||||    
T  6102214 ataaattgttttcagcttatttccataaattctcccagatagcttatgaaaacagcttatag 6102153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 15489398 - 15489365
Alignment:
Q  170 tttgtcacacaaatagcttatacataagcactta 203  Q
    ||||||||| ||||||||||||||||||||||||    
T  15489398 tttgtcacagaaatagcttatacataagcactta 15489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 34952268 - 34952211
Alignment:
Q  87 gttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||| |||||||||||||||||| |  |||||||||| |||||| |||| |||||    
T  34952268 gttttcagcttattttcataagttctctttgatagcttatgaaaacaacttacagctt 34952211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 36581653 - 36581620
Alignment:
Q  73 catgtctataaattgttttcaacttattttcata 106  Q
    |||||||||||| |||||||||||||||||||||    
T  36581653 catgtctataaactgttttcaacttattttcata 36581620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 44422744 - 44422695
Alignment:
Q  95 cttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||| |||  |||||||||||| |||| ||||||||||||    
T  44422744 cttattttcataagctctccaggatagcttataaaaatagcttatagctt 44422695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 49888812 - 49888763
Alignment:
Q  95 cttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||||||| || |||||||||| |||||| || |||||||    
T  49888812 cttattttcataagttctctaagatagcttatgaaaacaactaatagctt 49888763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 3215781 - 3215717
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| |||||||||  |||| |||||||||||||||| ||||||||  |||||| | ||||||||    
T  3215781 ataagttgttttcagtttatgttcataagttctttagaatagcttaggaaaacaccctatagctt 3215717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 5592695 - 5592759
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| |||||| || |||||||||||||| |||| ||  |||||||| |||||| ||||||||||    
T  5592695 ataagttgtttccagcttattttcataagctcttaagactagcttatgaaaacaacttatagctt 5592759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 10199381 - 10199477
Alignment:
Q  43 tttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    |||||||||  | ||| |||||| ||| | |||||  |||| ||||||||| |||||||||||||| ||| ||  ||||||||| |||| |||||||    
T  10199381 tttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttat 10199477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 27820355 - 27820411
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| ||||||||||||| ||||  | |||||||||| |||||||| ||||||||    
T  27820355 ttttcagcttattttcataaattctccaagatagcttataaaaacagcatatagctt 27820411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 35017643 - 35017575
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||| |||| || |||||||||||||| |||||| |||  |||| ||||||| |||||||| |||||    
T  35017643 catgtccataagttattttcaacttatttccataagctctccaggacagcttatgaaaacagcatatag 35017575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 43332538 - 43332486
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    |||||||| |||||||| ||||| |||| | |||||||||| |||||||||||    
T  43332538 tgttttcagcttattttaataagctcttcaagatagcttatgaaaacagctta 43332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 30389159 - 30389080
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatct 159  Q
    |||| ||||||||| |||||||||||||||||| ||||| ||||||| |||||||| |||||||| | ||||| ||||||    
T  30389159 ataagttgttttcagcttattttcataagttctctaggaaagcttatgaaaacagcgtatagcttatataaaagcaatct 30389080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 11745661 - 11745725
Alignment:
Q  79 tataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    ||||| ||||||||| |||| ||||||||| ||  ||||||||||||| ||||||||||||||||    
T  11745661 tataagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 11745725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 30277235 - 30277315
Alignment:
Q  60 aaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| ||||| |||| | |||| ||||||||| ||||||| |||||  ||| ||||||||||||| |||||||||||||    
T  30277235 aaatagcttaggacatggccataagttgttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 4762570 - 4762496
Alignment:
Q  79 tataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaa 153  Q
    ||||||||||||||| ||||||| |||||| |||| | |||||||||| |||||| |||  ||||||| ||||||    
T  4762570 tataaattgttttcagcttatttacataagctcttcaagatagcttatgaaaacaacttgaagcttttataaaaa 4762496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 6509306 - 6509400
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttat 167  Q
    |||| ||||||| | |||||| |||||||  ||||| |||  |||||||||||| ||||||||||||||||| | |||| ||||| || ||||||    
T  6509306 catgcctataaactattttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactttat 6509400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 31862547 - 31862489
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| |||||||||||||| ||| ||||||| ||||| |||||| ||||||||||    
T  31862547 tgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagctt 31862489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 1433600 - 1433544
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||||||||||||||| |||  |||||||||||| ||||| ||||| |||||    
T  1433600 ttttcaacttattttcataagctctccaggatagcttatgaaaactgcttaaagctt 1433544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 6950438 - 6950342
Alignment:
Q  24 ataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggata 120  Q
    |||| |||||||||| ||||||||||||  ||||| ||| |   || | |||||| |||| ||||||||| ||||||| |||||| |||||||||||    
T  6950438 ataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttatttccataagctctttaggata 6950342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 30013270 - 30013214
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| ||||||| ||| ||||||  |||||||||||| |||||||||||||||||    
T  30013270 ttttcagcttatttccattagttctacaggatagcttatgaaaacagcttatagctt 30013214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 35749588 - 35749640
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||| ||||||||||||||||||| ||||||||||  ||||| ||||||    
T  35749588 ttttcaacatattttcataagttctttaagatagcttatggaaacaacttata 35749640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 4558863 - 4558796
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    ||||||||| ||||||| |  |||||| |||||| ||| |||||||||||||  ||||||||||||||    
T  4558863 tgtctataagttgtttttagtttatttccataagctctctaggatagcttatggaaacagcttatagc 4558796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 14247240 - 14247295
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||||| |||||||||||||||||| || |||| ||||  ||||||||||||||    
T  14247240 tgttttcagcttattttcataagttctctacgatatcttacgaaaacagcttatag 14247295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 8062383 - 8062325
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| ||||||| |||||  ||| || |||||||||| |||||||||||||||||    
T  8062383 tgttttcagcttatttccataatctctctaagatagcttatgaaaacagcttatagctt 8062325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 9540967 - 9541057
Alignment:
Q  41 tgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaa 131  Q
    |||||||||||  ||||||||| |  ||| | |||||| |||| |||| |||| |||||||||| ||| ||| ||||||||||||| ||||    
T  9540967 tgtttgggagagcttatggaaacatcttatgacatgtccataatttgtgttcagcttattttcaaaagctctctaggatagcttatgaaaa 9541057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 10075576 - 10075634
Alignment:
Q  95 cttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaa 153  Q
    |||||||||||||| ||| ||||||||||||| |||| |||||||| ||| | ||||||    
T  10075576 cttattttcataagctctctaggatagcttatgaaaatagcttataacttatataaaaa 10075634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 18931314 - 18931372
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||| ||||||||  | ||||||| ||||||||||||| ||||||||||| |||||    
T  18931314 tgttttcgacttatttcaacaagttctctaggatagcttatgaaaacagcttacagctt 18931372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 26716454 - 26716574
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttat---gttttgtcacacaaa 182  Q
    |||||||| ||||||| | |||  ||| |||||||| | ||||||| | ||||||||||||||||||| ||| || ||||||    | |||| | | ||     
T  26716454 tgttttcagcttatttccgtaacctctctaggataggtcattaaaaaatcttatagcttttgtaaaaataatttgactttatttaatcttgttatagaag 26716553  T
Q  183 tagcttatacataagcactta 203  Q
    |||||||||||||||||||||    
T  26716554 tagcttatacataagcactta 26716574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 26771317 - 26771263
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    ||||||||||||||||||||||||| ||  ||| ||||| |||| ||||||||||    
T  26771317 ttttcaacttattttcataagttctctaatatatcttataaaaaaagcttatagc 26771263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 27028883 - 27028829
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||||| |||||||||||||| |||  | |||||||||| |||||||||||||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagc 27028829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 5227580 - 5227531
Alignment:
Q  95 cttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||| |||| | |||||||||  |||||||||||||||||    
T  5227580 cttattttcataagctcttcatgatagcttacaaaaacagcttatagctt 5227531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 11183611 - 11183542
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    ||||||||||  |||||||| ||||||| |||||| |||  ||| |||||| | ||||||||||||||||    
T  11183611 atgtctataagctgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagct 11183542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 12361284 - 12361175
Alignment:
Q  48 gagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttg 147  Q
    ||||| |||| ||||||| ||| | |||||| ||||  |||||||||||||||| ||| || |||   | ||| ||||| ||||||||||||||||| |     
T  12361284 gagatcttatagaaatagcttatgacatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagcttata 12361185  T
Q  148 taaaaacaat 157  Q
    | ||||||||    
T  12361184 tgaaaacaat 12361175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 26473755 - 26473820
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    |||||||||||  |  ||| |||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  26473755 catgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaactta 26473820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 39551162 - 39551283
Alignment:
Q  23 tataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagc 122  Q
    ||||| |||||||||   |||||||||||  ||||||||| |  ||| | |||||| | ||  |||||| |||||||||| ||||| |||  |||| |||    
T  39551162 tataagcatttgtgaaactgtttgggagaatttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagc 39551261  T
Q  123 ttattaaaacagcttatagctt 144  Q
    |||| |||||| ||||||||||    
T  39551262 ttatgaaaacaacttatagctt 39551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 1561299 - 1561211
Alignment:
Q  115 aggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttatgttttgtcacacaaatagcttatacataagcactta 203  Q
    |||||||||||| |||||| ||| |||||| | | |||||||| ||  ||||| ||| || | | ||||| ||||||||||||||||||    
T  1561299 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttatacataagcactta 1561211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 8060721 - 8060669
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| ||||||| |||||| ||| |||||| |||||| |||||||||||||    
T  8060721 ttttcagcttatttccataagctctctaggattgcttatgaaaacagcttata 8060669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 11569411 - 11569527
Alignment:
Q  24 ataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagct 123  Q
    ||||||| |||||||  |||||  ||||  ||||||||| || ||| | |||||  |||| ||||||||| |||||||||| ||  |||  | |||||||    
T  11569411 ataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagct 11569510  T
Q  124 tattaaaacagcttata 140  Q
    ||| |||||||||||||    
T  11569511 tatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 20672804 - 20672756
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacag 134  Q
    |||||||| |||||||||||||| |||  |||||||||||| |||||||    
T  20672804 tgttttcagcttattttcataagctctccaggatagcttataaaaacag 20672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 41957454 - 41957521
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| |||| ||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||    
T  41957454 catgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttata 41957521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 12425636 - 12425567
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| |||| ||||||||||||||||||||||||||||  | |||||||| | |||||||||||||||||    
T  12425636 tgtcaataagttgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagctt 12425567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 14182391 - 14182450
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||    
T  14182391 ataaattgttttcaacttattttcataagttc-tcaggataacttatgaaaacagcttata 14182450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 25705662 - 25705730
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||||||||  ||||||||||||||||||| |||  |||| ||||||||||| ||||||||||||||    
T  25705662 catgtctataagctgttttcaacttattttcacaagaccttttggatagcttatgaaaacagcttatag 25705730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 18875440 - 18875361
Alignment:
Q  61 aatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||||| |||||| | |||| ||||||||||||| ||| |||||| |||  |||||| |||||||||||||||||||    
T  18875440 aatagtttatggcatgcccataagttgttttcaacttgtttccataagctctccaggatatcttattaaaacagcttata 18875361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 32197774 - 32197720
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||    
T  32197774 tgttttcatcttattttcataagttcttcaggatagcttatggaaacagcttata 32197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 16889801 - 16889720
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaaca 155  Q
    |||||||||| |||||||||  |||||| |||||  ||| ||| ||||||||| ||||||||||||||||| | ||||||||    
T  16889801 atgtctataagttgttttcagattatttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaaca 16889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 1550964 - 1550880
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||| |||| |||||||||| |||||| ||||||| |||| || ||| ||||| ||||||||||||||||| | ||||| ||||    
T  1550964 catgtatatatattgttttcatcttattgtcataagctcttcagtataacttatgaaaacagcttatagcttgtataaaagcaat 1550880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 3237153 - 3237093
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||| |||| |||| | |||||||||||| ||||||||||||||||| |||||||||||||    
T  3237153 ataagttgtgttcagcatattttcataagctctttaggatagcttatgaaaacagcttata 3237093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 18704039 - 18704119
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaa 153  Q
    ||||||||||| ||||||||| ||||||| |||||| |||||   ||||||||| |||||| |||||||||| | ||||||    
T  18704039 catgtctataagttgttttcagcttatttccataagatctttgtaatagcttatgaaaacaacttatagcttatataaaaa 18704119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 18286854 - 18286788
Alignment:
Q  77 tctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    ||||||||||||||| | |||||| |  |||||| |||||||||| |||| ||||||||||||||||    
T  18286854 tctataaattgtttttagcttattatagtaagttgtttaggatagtttatgaaaacagcttatagct 18286788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 4014440 - 4014513
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatct 159  Q
    |||||||| ||||||||||||||||||  | |||||||||| ||||||||||||   ||||  |||||||||||    
T  4014440 tgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttatcatttttccaaaaacaatct 4014513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 13604864 - 13604917
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    |||||||||||||||||||||||| |||| | |||| ||||| |||||||||||    
T  13604864 ttgttttcaacttattttcataagctcttcaagataacttatgaaaacagctta 13604917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 17258899 - 17258952
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    |||||||| |||||||||||||| |||| ||||||| |||| ||||||||||||    
T  17258899 tgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 11707135 - 11707055
Alignment:
Q  60 aaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| ||| | ||||| ||||| ||||||||| |||||||||| ||| |||  | |||||||||| |||||||||||||    
T  11707135 aaatagattatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 14674903 - 14674975
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttt 145  Q
    ||||| |||||| |||||| ||| ||||||||||||||||  |||||| ||||| | |||| |||||||||||    
T  14674903 catgtttataaactgttttaaacatattttcataagttctacaggatatcttatgagaacaacttatagcttt 14674975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 26515215 - 26515103
Alignment:
Q  29 catttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttatta 128  Q
    ||||||||||  |||||| ||||| ||||| |||||||||| | | |||| |||   |||||| | |||||||  |||| || ||| ||||||||||| |    
T  26515215 catttgtgagaatgtttgagagattttatgaaaatagtttatgacctgtccatagtctgtttttagcttatttctataatttttttcggatagcttatga 26515116  T
Q  129 aaacagcttatag 141  Q
    |||||||||||||    
T  26515115 aaacagcttatag 26515103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 32172705 - 32172649
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| ||||||| ||| ||||||| | |||||||||| |||||||||||||||||    
T  32172705 ttttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagctt 32172649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 7985023 - 7984964
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttt 145  Q
    |||||||| ||||||||||||| ||||  | |||||||||| |||| |||||||||||||    
T  7985023 tgttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatagcttt 7984964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 9202764 - 9202835
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||| || ||||||||||||||||||| | |||| ||||| |||||||||||| |||| | | ||||||||    
T  9202764 tgtttccagcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaacaat 9202835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 6593351 - 6593297
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||||| |||||||||||||| ||| || | |||||||| |||||||||||||||    
T  6593351 ttttcagcttattttcataagctctctaaggtagcttatcaaaacagcttatagc 6593297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 7319013 - 7319078
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||| |||| ||||| ||| ||||||||||||||||||  | |||||||||| ||||||| |||||    
T  7319013 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttata 7319078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 39105509 - 39105460
Alignment:
Q  95 cttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||||||||||||  | |||||||||| ||||||| |||||||||    
T  39105509 cttattttcataagttctccaagatagcttatgaaaacagattatagctt 39105460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 4273331 - 4273407
Alignment:
Q  24 ataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttatt 100  Q
    |||| |||||||||| ||||||| ||||   |||||||| || ||| | | ||||||||| ||||||||||||||||    
T  4273331 ataaacatttgtgagattgtttgagagaacctatggaaacagcttatgacttgtctataagttgttttcaacttatt 4273407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 8334631 - 8334571
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||||||| |||||||||||||||| || | |||  ||||| |||||| ||||||    
T  8334631 ataaattgttttcagcttattttcataagtttttcaagattacttatcaaaacatcttata 8334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 21768213 - 21768265
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagctta 138  Q
    |||||||||||||||||| |||| |||| | |||| ||||| |||||||||||    
T  21768213 tgttttcaacttattttcgtaagctcttcaagataacttatgaaaacagctta 21768265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 28586720 - 28586836
Alignment:
Q  24 ataaccatttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagct 123  Q
    |||| |||||||||   |||||||||||  |||||||||||| ||| | ||| ||  |||  |||||||| |||||||  ||||| ||| ||||||||||    
T  28586720 ataagcatttgtgaaactgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctctaggatagct 28586819  T
Q  124 tattaaaacagcttata 140  Q
      | |||||||||||||    
T  28586820 cgtcaaaacagcttata 28586836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 42582562 - 42582510
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttat 126  Q
    ||||| ||||||| |||||||||||||| |||||||||| || |||| |||||    
T  42582562 atgtccataaattattttcaacttatttccataagttctctaagataacttat 42582510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 20907414 - 20907330
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||| ||||| |||||||||||||||||||||  |||||| |||||||||| | ||||||| ||||||||| | | ||||||||    
T  20907414 catgtttataagttgttttcaacttattttcattggttcttcaggatagcttgtgaaaacagtttatagcttatatgaaaacaat 20907330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 35571650 - 35571705
Alignment:
Q  89 tttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||||| ||||||| || |||||||||| |||||||||||||||||    
T  35571650 tttcaacttattttcacaagttctctaagatagcttatgaaaacagcttatagctt 35571705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 29601024 - 29601082
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| |||||||||||||||||| ||||||||| ||| ||||||| |||||||||    
T  29601024 tgttttcagcttattttcataagttctctaggatagcatatgaaaacagattatagctt 29601082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 6978965 - 6979034
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||||||||||  |||||||| |||||||||||||  |||||||||| |||||| |||||| ||||||||    
T  6978965 catgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaacttatagc 6979034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 24929579 - 24929478
Alignment:
Q  54 ttatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaa 153  Q
    ||||||||| || ||| |||||||  |||||||||||||| ||||||| |||||| ||| ||| | || |||| |||||| |||||||||||| | ||||    
T  24929579 ttatggaaacagcttatggcatgttcataaattgttttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaa 24929480  T
Q  154 ca 155  Q
    ||    
T  24929479 ca 24929478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 44320001 - 44319945
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| ||||| ||||||    
T  44320001 ttttcaactaattttcataagttctctaggatagcttatcaaaatagcttgtagctt 44319945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 11264368 - 11264301
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| ||||| |||||||||||||||| |||||| ||| |||||| |||||| |||||| ||||||    
T  11264368 catgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttata 11264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 51630165 - 51630094
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||||| ||||||||||||| ||||| | |||||||||| |||| |||||||||||| | | ||||||||    
T  51630165 tgttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaat 51630094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 24370970 - 24371040
Alignment:
Q  87 gttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||||| |||||||  ||||  | ||||||||||||||| |||||| |||||||||||||||||| ||||    
T  24370970 gttttcagcttatttctataaactatttaggatagcttatgaaaacaacttatagcttttgtaaaagcaat 24371040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 40174628 - 40174546
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||| ||||| ||||||||||||||| ||| |||||||  |   |||||||| ||||||||||||||||||| | ||||||||    
T  40174628 tgtccataaactgttttcaacttattatcacaagttctccaatgtagcttatgaaaacagcttatagcttttatgaaaacaat 40174546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 47800676 - 47800623
Alignment:
Q  87 gttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||| |||||||||||||| |||| | |||||||||| |||||||||||||    
T  47800676 gttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 3155662 - 3155586
Alignment:
Q  81 taaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||| |||||||| ||||||||||| ||||||| | ||||| |||| |||||||||| |||||| |  |||||||||    
T  3155662 taaactgttttcagcttattttcattagttcttcaagatagtttatgaaaacagcttgtagcttgtacaaaaacaat 3155586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 28300314 - 28300386
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||||||||||||||||||||| |||| | |||||| ||| |||| || ||||||||| |  |||||||||    
T  28300314 ttgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaacaat 28300386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 28614826 - 28614865
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttatt 127  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  28614826 ttttcagcttattttcataagttctctaggatagcttatt 28614865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 25332835 - 25332757
Alignment:
Q  80 ataaattgttttcaacttattttcataagttct-ttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||| ||||||||| ||||||||||||||||||  || |||||||||| |||| |||||| ||||| |  |||||||||    
T  25332835 ataagttgttttcagcttattttcataagttctgataagatagcttataaaaatagcttagagcttatacaaaaacaat 25332757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 39691161 - 39691215
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||||||||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  39691161 ttttcaacttattttcgtaagttcttcaatatagcttataaaaacaacttatagc 39691215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 2996625 - 2996556
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||||||||||||||||| | |||  | |||||||||| |||||| |||||| ||| | ||||||||||    
T  2996625 ttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttatataaaaacaat 2996556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 7693999 - 7694084
Alignment:
Q  59 gaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||| | | |||||  |||| ||||||||| ||||||| |||||  |||  |||||| ||||| |||||||||||||||||    
T  7693999 gaaatagttaatgacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagctt 7694084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 8469017 - 8468944
Alignment:
Q  71 ggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| |||| |||||||||  ||||||||||||| ||| ||| ||| ||||| |||||| || |||||||    
T  8469017 ggcatgtccataagttgttttcagattattttcataagctctctagaataacttatgaaaacaactaatagctt 8468944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 51044506 - 51044543
Alignment:
Q  96 ttattttcataagttctttaggatagcttattaaaaca 133  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  51044506 ttattttcataagttctctaggatagcttatgaaaaca 51044543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 2977973 - 2978033
Alignment:
Q  67 ttagggcatgtctataaattgtttt-caacttattttcataagttctttaggatagcttat 126  Q
    ||||| |||||||| ||| |||||| || |||||||||||||||| | |||||||||||||    
T  2977973 ttaggacatgtctacaaactgtttttcagcttattttcataagttttctaggatagcttat 2978033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 20031801 - 20031745
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| || ||||||||||||||| ||  ||||||||| ||||| |||||||||||    
T  20031801 ttttcagctcattttcataagttctctaaaatagcttatgaaaactgcttatagctt 20031745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 23459680 - 23459624
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||| |||||||||| || | |||  ||||| |||||||||||||||||    
T  23459680 ttttcaacttatattcataagtttttcaagatctcttatgaaaacagcttatagctt 23459624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 27043800 - 27043904
Alignment:
Q  41 tgtttgggagatattatggaaatagtttagggcat-gtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    ||||||| |||  ||||| |||||| ||| ||||| ||| |||||||||||| | ||||| |||||| |||||  | ||||| |||| |||||| |||||    
T  27043800 tgtttggaagaagttatgcaaatagcttatggcatcgtccataaattgtttttagcttatattcatacgttctccaagatagtttataaaaacatcttat 27043899  T
Q  140 agctt 144  Q
    |||||    
T  27043900 agctt 27043904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 47118980 - 47119052
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||||||| ||||| ||||||||||||| | |||||| ||| || ||| |||||||||| | | ||||||||    
T  47118980 ttgttttcagcttatcttcataagttcttcaagatagcatatgaatacaacttatagcttatatgaaaacaat 47119052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 49202705 - 49202641
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| ||||||||||||||||||||| |||| |  | |||||||||  |||||| ||||||||||    
T  49202705 ataagttgttttcaacttattttcattagttatccaagatagcttacgaaaacaacttatagctt 49202641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 50799992 - 50800103
Alignment:
Q  32 ttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaa 131  Q
    ||||||| ||||||||||||  | ||| ||| |  ||| | |||||||||||  |||||||| ||||||| || |||||||  | |||||||||  ||||    
T  50799992 ttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagctgttttcagcttatttcca-aagttctccatgatagcttaagaaaa 50800090  T
Q  132 cagcttatagctt 144  Q
    |||||||||||||    
T  50800091 cagcttatagctt 50800103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 52259683 - 52259631
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||||||||||||||||| |||    |||||||||| |||||||||||||    
T  52259683 ttttcaacttattttcataagctctcccagatagcttataaaaacagcttata 52259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 53138097 - 53138037
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||| ||||||||||||||||||| |||||| |  |||||||||||  |||| ||||||||    
T  53138097 ataagttgttttcaacttattttcctaagttttccaggatagcttaccaaaagagcttata 53138037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 13869101 - 13869169
Alignment:
Q  76 gtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| |||||||||| |||||||||| ||||||  |||||| ||||| |||||||||||||||||    
T  13869101 gtctataagttgttttcaaattattttcattagttctccaggataacttatgaaaacagcttatagctt 13869169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 680570 - 680499
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||| |||||| |||||||| |||||||||| |||||||| | |||||||||| |||| ||||||||||||    
T  680570 catgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagctt 680499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 10884542 - 10884592
Alignment:
Q  91 tcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  10884542 tcaacttattttcataagctctctaggatagcttatgaaaacagcttatag 10884592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 13736300 - 13736366
Alignment:
Q  77 tctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    |||||||  ||||||||| ||||||||||||| ||| ||| ||||||||| ||||||||||||||||    
T  13736300 tctataagctgttttcaagttattttcataagctctctagtatagcttatgaaaacagcttatagct 13736366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 9556290 - 9556235
Alignment:
Q  89 tttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||||||||| | | ||||||||||||| ||||||| |||||||||    
T  9556290 tttcaacttattttcataagctttctaggatagcttatgaaaacagtttatagctt 9556235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 22681201 - 22681272
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||| | ||||||| |||||||||| |||||||| |||| ||||||||||||||||| | | ||||||||    
T  22681201 tgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaat 22681272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 35993385 - 35993436
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttat 126  Q
    |||| |||||||||||||| |||||||||||||||||| || ||||||||||    
T  35993385 tgtccataaattgttttcagcttattttcataagttctctatgatagcttat 35993436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 41032958 - 41033088
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctg-tctttatgttt 171  Q
    ||||||||||| ||||||||| ||||||| |||||  ||| || ||||  |||| ||||  |||| |||||| |||||||||||| |  | ||||| |||    
T  41032958 catgtctataagttgttttcagcttatttccataaactctataagataa-ttatgaaaatcgcttgtagcttatgtaaaaacaattttatttttatcttt 41033056  T
Q  172 tgtcacacaaatagcttatacataagcactta 203  Q
    ||| | | ||||||||||||||||||||||||    
T  41033057 tgttatagaaatagcttatacataagcactta 41033088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 42621378 - 42621449
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||| ||| ||||||||| |||||||||| |||||||  || ||| ||||| |||||||||||||||||    
T  42621378 catgtctgtaagttgttttcagcttattttcacaagttctccagaataacttatgaaaacagcttatagctt 42621449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 36415683 - 36415745
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||| ||||||||| ||||||||| ||||||||  | |||||||||| |||||||||||||||    
T  36415683 ataagttgttttcatcttattttcgtaagttctacatgatagcttatgaaaacagcttatagc 36415745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 4026870 - 4026817
Alignment:
Q  87 gttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||| ||||||||||||||||||| ||||||  |||| |||||||||||||    
T  4026870 gttttcagcttattttcataagttcttcaggataatttatgaaaacagcttata 4026817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 9174867 - 9174814
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatag 141  Q
    |||||| |||||||||||||| ||| || |||||||||| ||||||||||||||    
T  9174867 ttttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatag 9174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 18066180 - 18066111
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||| ||||||||| ||||||||  | |||||||||| ||||||||||||||||| | | ||||||||    
T  18066180 ttttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaacaat 18066111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 18179258 - 18179314
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||| ||||||||| ||||||||  |||||||||||| ||| |||||||||||||    
T  18179258 ttttcagcttattttcgtaagttctccaggatagcttatgaaagcagcttatagctt 18179314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 40279472 - 40279408
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttat 139  Q
    |||| ||||| |||||||||||||||||||||||||||  |  ||||||||| |||||| |||||    
T  40279472 tgtccataaactgttttcaacttattttcataagttctccaatatagcttatgaaaacaacttat 40279408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 41039744 - 41039784
Alignment:
Q  163 tttatgttttgtcacacaaatagcttatacataagcactta 203  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  41039744 tttatcttttgtcacagaaatagcttatacataagcactta 41039784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 9877954 - 9878013
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||||||||||||||||| ||   |||||| |||||||| ||||| ||||    
T  9877954 ttgttttcaacttattttcataagttctctaatgtagctttttaaaacaacttatggctt 9878013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 44590093 - 44590034
Alignment:
Q  81 taaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||||||||| |||||| ||| |||||||| | |||||||||| |||||| ||||||    
T  44590093 taaattgttttcagcttattctcacaagttcttcaagatagcttatgaaaacaacttata 44590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 26626927 - 26626869
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||  |||||||||||||||||  | |||||||||| |||||||||| ||||||    
T  26626927 tgttttcaggttattttcataagttctgcaagatagcttatgaaaacagcttctagctt 26626869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 32821876 - 32821806
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    |||||| ||||  ||||||||  ||||||  ||||| ||||||||||||||||| ||||||| ||||||||    
T  32821876 catgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacagtttatagct 32821806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 29316793 - 29316862
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||| ||||||| ||||||||||  | ||||||| || |||||||||||||| || ||| ||||||||    
T  29316793 ttttcagcttatttccataagttctccaagatagctgatgaaaacagcttatagattatgtgaaaacaat 29316862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 40682405 - 40682469
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttt 145  Q
    |||| ||||||||||||||||||||||||||| | | |||| ||||| ||||| ||||||| ||||    
T  40682405 ataagttgttttcaacttattttcataagttc-tcaagatatcttatgaaaactgcttataacttt 40682469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 1493523 - 1493587
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| ||||||||| ||||||||||||||||  | |||||  ||||| |||||||| ||||||||    
T  1493523 ataagttgttttcagcttattttcataagttagtcaggatgacttatgaaaacagcatatagctt 1493587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 12215893 - 12215805
Alignment:
Q  54 ttatggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||||||||||| ||| | |||||| ||||  |||||||| | ||||  |||||| |||  ||||| |||||| |||||||||||||||    
T  12215893 ttatggaaatagcttatgacatgtccataagctgttttcaccatattcccataagctctcaaggatggcttataaaaacagcttatagc 12215805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 36236452 - 36236513
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagct 143  Q
    |||||||||||||| ||||||||||||||  ||  |||||||| ||| |||||| |||||||||    
T  36236452 ataaattgttttcagcttattttcataag--ctccaggatagcatataaaaacaacttatagct 36236513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 37034109 - 37034061
Alignment:
Q  53 attatggaaatagtttagggcatgtctataaattgttttcaacttattt 101  Q
    |||||||||| || ||| | ||||| |||||||||||||||||||||||    
T  37034109 attatggaaacagcttaagacatgtttataaattgttttcaacttattt 37034061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 42458008 - 42457952
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagct 136  Q
    |||| ||||||||| |||||||||||| ||||| || |||||||||| || ||||||    
T  42458008 ataagttgttttcagcttattttcatatgttctctaagatagcttatgaatacagct 42457952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 43141931 - 43141867
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| |||||||||  |||||| |||||  |||| |||||||||||| |||||| ||||||||||    
T  43141931 ataagttgttttcattttatttccataaactcttcaggatagcttatgaaaacatcttatagctt 43141867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 43985021 - 43985073
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||| |||||||||||||| |||| | |||||||||| |||||| ||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttatgaaaacaacttata 43985073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 281851 - 281922
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||||| ||||||||| ||||||| ||| || ||| ||||||||||||| || ||||||||||||||    
T  281851 catgtctataagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagctt 281922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 1344886 - 1344922
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagtt 110  Q
    |||||||||||||||||||||||||||||||||||||    
T  1344886 atgtctataaattgttttcaacttattttcataagtt 1344922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 6647471 - 6647387
Alignment:
Q  56 atggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    |||||||||| ||| | |||||  ||||  ||||||||||||||||||||||| ||| || |||||||||| ||||||| |||||    
T  6647471 atggaaatagcttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaaacagattata 6647387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 9093572 - 9093630
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||| ||||||||| |||||||| || || ||||||| |||||||||||||||||    
T  9093572 tgttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagctt 9093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 31624144 - 31624086
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||||||||||| ||||  | |||||| ||| |||||||||||||||||    
T  31624144 tgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagctt 31624086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 31671079 - 31671161
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||||| | ||||||||| |||||||||||||| | | |||||||| |||  ||||||||||||||||| | | ||||||||    
T  31671079 tgtctatcagttgttttcagcttattttcataagctatctaggatagtttacgaaaacagcttatagcttatatgaaaacaat 31671161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 4006780 - 4006687
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaatctgtctttat 167  Q
    ||||| |||| || |||||| |||||||||||||  |||   ||||||||||| |||||| |||||||||| | |||||||||| || ||||||    
T  4006780 atgtccataagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttat 4006687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 835265 - 835321
Alignment:
Q  86 tgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagc 142  Q
    |||||||| ||||||||||||||||||  | |||||||||| ||||| |||||||||    
T  835265 tgttttcagcttattttcataagttctccaagatagcttatgaaaactgcttatagc 835321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 7148718 - 7148662
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||||||||||||||| |||  ||| ||||||||||||| | ||||||||||    
T  7148718 ttttcaacttattttcataagctctccagggtagcttattaaaataccttatagctt 7148662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 9833111 - 9833167
Alignment:
Q  71 ggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttatt 127  Q
    |||||||| ||||||| |||||||||||||| |||||| |||| | |||||||||||    
T  9833111 ggcatgtccataaattattttcaacttatttccataagctcttcatgatagcttatt 9833167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 3217125 - 3217184
Alignment:
Q  74 atgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaaca 133  Q
    ||||| ||||| ||||||||||||||||||||||| | ||||  ||||||||| ||||||    
T  3217125 atgtccataaaatgttttcaacttattttcataagatttttaatatagcttatgaaaaca 3217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 21024266 - 21024207
Alignment:
Q  85 ttgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    ||||||||||||||||||||||||||||  |||||||  ||| |||| ||||||| ||||    
T  21024266 ttgttttcaacttattttcataagttctcgaggatagtatatgaaaatagcttattgctt 21024207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 33818084 - 33818126
Alignment:
Q  182 atagcttatacataagcacttagtctttaaacacttaattaag 224  Q
    ||||||||||||||||||||||  || ||||||||||||||||    
T  33818084 atagcttatacataagcacttatgctataaacacttaattaag 33818126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 2023391 - 2023424
Alignment:
Q  75 tgtctataaattgttttcaacttattttcataag 108  Q
    ||||||||| ||||||||||||||||||||||||    
T  2023391 tgtctataagttgttttcaacttattttcataag 2023424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 14492362 - 14492285
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    |||||||||||||| || |||| || ||  ||| ||||||| ||||| ||||||||||||||||| | | ||||||||    
T  14492362 ataaattgttttcagctgatttccacaaactctctaggataacttatgaaaacagcttatagcttgtatcaaaacaat 14492285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 25100095 - 25100026
Alignment:
Q  88 ttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagcttttgtaaaaacaat 157  Q
    ||||||||||||||  ||||| |||||| |||||||||| |||||| |||||| ||| | | ||||||||    
T  25100095 ttttcaacttatttctataagctctttaagatagcttatgaaaacaacttataacttctatgaaaacaat 25100026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 8035158 - 8035222
Alignment:
Q  80 ataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||| ||||||||||||||||||| |||| | | ||||||| ||||| |||||| ||| ||||||    
T  8035158 ataacttgttttcaacttattttcgtaagctttctaggataacttatgaaaacaacttctagctt 8035222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 31583746 - 31583686
Alignment:
Q  73 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaaca 133  Q
    |||||| |||| ||||||||||||||||| |||||| | ||  ||||||||||| ||||||    
T  31583746 catgtccataagttgttttcaacttatttccataagcttttcgggatagcttatgaaaaca 31583686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 31668783 - 31668823
Alignment:
Q  163 tttatgttttgtcacacaaatagcttatacataagcactta 203  Q
    |||||||||||| | | ||||||||||||||||||||||||    
T  31668783 tttatgttttgttatagaaatagcttatacataagcactta 31668823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 33737555 - 33737515
Alignment:
Q  163 tttatgttttgtcacacaaatagcttatacataagcactta 203  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  33737555 tttatgttttgttacagaaatagctgatacataagcactta 33737515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 159959 - 160043
Alignment:
Q  56 atggaaatagtttagggcatgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacagcttata 140  Q
    ||||||| |||||| | |||||||||||   ||||||| ||||||| || ||| ||||||||||||||||| |||||| ||||||    
T  159959 atggaaacagtttatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttatgaaaacatcttata 160043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 6997 - 6948
Alignment:
Q  95 cttattttcataagttctttaggatagcttattaaaacagcttatagctt 144  Q
    |||||||||||||| |||| | |||||||||  |||||||||||||||||    
T  6997 cttattttcataagctcttcatgatagcttacaaaaacagcttatagctt 6948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 27675 - 27615
Alignment:
Q  41 tgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttattt 101  Q
    |||||||||||  |||||||||||| ||| | |||| |||||| ||||||||| |||||||    
T  27675 tgtttgggagagcttatggaaatagcttatgacatggctataagttgttttcagcttattt 27615  T

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