View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_66 (Length: 256)
Name: NF2018_low_66
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_66 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 22576531 - 22576754
Alignment:
| Q |
18 |
gagctatagatgatatgaccagacaaagttgctttcaaccatgcataataatgctcattcatttggattaacataggaaaatcttacagaagataatgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22576531 |
gagctatagatgatatgaccagacaaagttgctttcaaccatgcataataatgctcattcatttggattaacataggaaaatcttacagaagataatgta |
22576630 |
T |
|
| Q |
118 |
tatgttttgggaacttaattagtccttgcacaacagaaacaaatgaataccaatcatggcttaagacagggcatacacatgcccatattttctatgtctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22576631 |
tatgttttgggaacttaattagtccttgcacaacagaaacaaatgaataccaatcatggcttaagacagggcatacacatgcccatattttctatgtctt |
22576730 |
T |
|
| Q |
218 |
tttcatttctttcatgtccccttt |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
22576731 |
tttcatttctttcatgtccccttt |
22576754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University