View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_68 (Length: 253)

Name: NF2018_low_68
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_68
NF2018_low_68
[»] chr3 (7 HSPs)
chr3 (1-146)||(49221510-49221654)
chr3 (90-150)||(20184447-20184507)
chr3 (90-150)||(27688485-27688545)
chr3 (90-150)||(27695574-27695634)
chr3 (106-150)||(39992509-39992553)
chr3 (107-148)||(21815909-21815950)
chr3 (107-151)||(20185829-20185873)
[»] scaffold0029 (2 HSPs)
scaffold0029 (90-151)||(70667-70728)
scaffold0029 (107-149)||(71845-71887)
[»] scaffold0011 (1 HSPs)
scaffold0011 (156-221)||(3870-3935)
[»] chr2 (6 HSPs)
chr2 (107-151)||(36889763-36889807)
chr2 (90-151)||(36888336-36888397)
chr2 (107-150)||(7184880-7184923)
chr2 (107-148)||(13809426-13809467)
chr2 (110-154)||(26892459-26892503)
chr2 (110-154)||(26897898-26897942)
[»] chr7 (4 HSPs)
chr7 (90-149)||(45088251-45088310)
chr7 (107-150)||(21709157-21709200)
chr7 (90-147)||(45087067-45087124)
chr7 (113-150)||(45596868-45596905)
[»] chr1 (8 HSPs)
chr1 (92-151)||(33333413-33333472)
chr1 (90-150)||(33332176-33332236)
chr1 (108-151)||(16962008-16962051)
chr1 (107-149)||(51599449-51599491)
chr1 (107-150)||(46014700-46014743)
chr1 (107-149)||(46015873-46015915)
chr1 (107-149)||(51597961-51598003)
chr1 (107-148)||(50682603-50682644)
[»] chr8 (13 HSPs)
chr8 (107-149)||(14816570-14816612)
chr8 (107-149)||(14829128-14829170)
chr8 (107-150)||(9311020-9311063)
chr8 (156-211)||(19951967-19952022)
chr8 (112-150)||(14819391-14819429)
chr8 (156-221)||(19432278-19432343)
chr8 (156-221)||(19568428-19568493)
chr8 (107-151)||(39270810-39270854)
chr8 (107-146)||(9312192-9312231)
chr8 (107-150)||(39567062-39567105)
chr8 (107-148)||(45378564-45378605)
chr8 (107-147)||(39568524-39568564)
chr8 (107-147)||(44633790-44633830)
[»] chr6 (9 HSPs)
chr6 (157-218)||(5522026-5522087)
chr6 (90-151)||(29751139-29751200)
chr6 (107-150)||(21611914-21611957)
chr6 (90-149)||(29744781-29744840)
chr6 (156-221)||(19480427-19480492)
chr6 (106-150)||(14403687-14403731)
chr6 (107-149)||(5660207-5660249)
chr6 (107-152)||(21282814-21282859)
chr6 (110-150)||(21283922-21283962)
[»] chr4 (15 HSPs)
chr4 (107-151)||(756485-756529)
chr4 (90-150)||(51645970-51646030)
chr4 (107-150)||(36220616-36220659)
chr4 (90-145)||(50551413-50551468)
chr4 (107-149)||(702666-702708)
chr4 (107-149)||(770965-771007)
chr4 (107-149)||(35060469-35060511)
chr4 (108-149)||(11038577-11038618)
chr4 (107-152)||(35055330-35055375)
chr4 (107-147)||(16039694-16039734)
chr4 (106-149)||(11039745-11039788)
chr4 (107-150)||(16038274-16038317)
chr4 (107-149)||(701633-701675)
chr4 (107-149)||(769932-769974)
chr4 (114-148)||(36219408-36219442)
[»] chr5 (2 HSPs)
chr5 (107-150)||(19718906-19718949)
chr5 (156-221)||(13585915-13585980)
[»] scaffold0394 (1 HSPs)
scaffold0394 (113-150)||(14269-14306)
[»] scaffold0031 (3 HSPs)
scaffold0031 (108-150)||(123423-123465)
scaffold0031 (108-150)||(134299-134341)
scaffold0031 (106-150)||(129434-129478)


Alignment Details
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 49221654 - 49221510
Alignment:
Q  1 cctaagacattttgggttaatccattaacagaagggaccaaattgtgtnnnnnnnnttaacttaaaataccaaaaacggacnnnnnnnnagttatggaac 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||        ||||||||||||||| |||| ||          |||||||| ||    
T  49221654 cctaagacattttgggttaatccattaacggaagggaccgaattgtgtaaaaaaaattaacttaaaatacc-aaaatggttttttttttagttatgggac 49221556  T
Q  101 taacctgataccaaaaaactagttaagggactaaaatagcaattaa 146  Q
    ||||| |||||||||||| |||||||||||| |||||| |||||||    
T  49221555 taacccgataccaaaaaattagttaagggacaaaaataacaattaa 49221510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 20184507 - 20184447
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||| || || | |||||||||||| ||||||||||||||||||| |||||||||||    
T  20184507 agttatgggaccaaaccgataccaaaaaattagttaagggactaaaataacaattaagcct 20184447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 27688545 - 27688485
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||| || || | ||||||||| || |||||||||||||||||||||||||||||||    
T  27688545 agttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcct 27688485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 27695574 - 27695634
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||| || || | ||||||||| || |||||||||||||||||||||||||||||||    
T  27695574 agttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcct 27695634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 39992509 - 39992553
Alignment:
Q  106 tgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  39992509 tgataccaaaaaattagttaagggactaaaatagtaattaagcct 39992553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 21815950 - 21815909
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagc 148  Q
    ||||| |||||| |||||||||||| ||||||||||||||||    
T  21815950 gatactaaaaaattagttaagggacgaaaatagcaattaagc 21815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 20185829 - 20185873
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    ||||| |||||| ||| ||| ||||||||||||||||||||||||    
T  20185829 gatacaaaaaaattaggtaatggactaaaatagcaattaagcctt 20185873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 70728 - 70667
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    |||||||| || || | |||||||||||| ||||||||||||||||||||||||||||||||    
T  70728 agttatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcctt 70667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 71845 - 71887
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  71845 gataccaaaaaattagttaagggactaaaatagcaattaagcc 71887  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 3870 - 3935
Alignment:
Q  156 caaatatgagtaagtcatctacgtagagatatatggatgtgtaaatgttattatcatatttataat 221  Q
    |||||||||| ||||||||||| |||||| |||||| |||||||||||| ||||||||||| ||||    
T  3870 caaatatgagcaagtcatctacatagagacatatggttgtgtaaatgtttttatcatatttgtaat 3935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 36889763 - 36889807
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  36889763 gataccaaaaaattagttaagggactaaaatagcaattaagcctt 36889807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 36888397 - 36888336
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    |||||||| || || | |||||||||||| ||| ||||||||||||||||||||||||||||    
T  36888397 agttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcctt 36888336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 7184923 - 7184880
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  7184923 gataccaaaaaattagttaagagactaaaatagcaattaagcct 7184880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 13809467 - 13809426
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagc 148  Q
    |||||||||||| |||||||||| ||||||||| ||||||||    
T  13809467 gataccaaaaaattagttaagggcctaaaatagaaattaagc 13809426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 26892503 - 26892459
Alignment:
Q  110 accaaaaaactagttaagggactaaaatagcaattaagccttcaa 154  Q
    |||||||||  ||||||||||| |||| |||||||||||||||||    
T  26892503 accaaaaaataagttaagggaccaaaagagcaattaagccttcaa 26892459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 26897942 - 26897898
Alignment:
Q  110 accaaaaaactagttaagggactaaaatagcaattaagccttcaa 154  Q
    |||||||||  ||||||||||| |||| |||||||||||||||||    
T  26897942 accaaaaaataagttaagggaccaaaagagcaattaagccttcaa 26897898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 45088251 - 45088310
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||| || || ||||||||||| || ||||||||||||||||||||||||||||||    
T  45088251 agttatgggaccaaactgataccaaacaattagttaagggactaaaatagcaattaagcc 45088310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 21709200 - 21709157
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||    
T  21709200 gatactaaaaaattagttaagggacgaaaatagcaattaagcct 21709157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 45087124 - 45087067
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaag 147  Q
    |||||||| || || | |||||||||||| ||||||| ||||||||||| ||||||||    
T  45087124 agttatgggaccaaaccgataccaaaaaattagttaaaggactaaaataacaattaag 45087067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 45596905 - 45596868
Alignment:
Q  113 aaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  45596905 aaaaaattagttaagggattaaaatagcaattaagcct 45596868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 33333413 - 33333472
Alignment:
Q  92 ttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    |||||| || || |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  33333413 ttatgggaccaaactgataccaaaaaattagttaagggactaaaatagcaattaaacctt 33333472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 33332236 - 33332176
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||| || || | ||||||||| ||||||||||| ||||||||||||||||||||||    
T  33332236 agttatgggaccaaaccgataccaaacaactagttaagagactaaaatagcaattaagcct 33332176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 16962051 - 16962008
Alignment:
Q  108 ataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  16962051 ataccaaaaaattagttaagggacaaaaatagcaattaagcctt 16962008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 51599449 - 51599491
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  51599449 gataccaaaaaattagttaagggacgaaaatagcaattaagcc 51599491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 46014743 - 46014700
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| |||||||  ||||||||||||||||||||||    
T  46014743 gataccaaaaaattagttaaatgactaaaatagcaattaagcct 46014700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 46015873 - 46015915
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| || |||||||||||||||| ||||||||||    
T  46015873 gataccaaaaaattacttaagggactaaaataacaattaagcc 46015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 51598003 - 51597961
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    ||||||||||||  ||||||||||| |||||||||||||||||    
T  51598003 gataccaaaaaataagttaagggacgaaaatagcaattaagcc 51597961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 50682603 - 50682644
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagc 148  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  50682603 gataccaaaaaaataattaagggaccaaaatagcaattaagc 50682644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 14816612 - 14816570
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  14816612 gataccaaaaaattagttaagggactaaaatagcaattaagcc 14816570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 14829128 - 14829170
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  14829128 gataccaaaaaattagttaagggactaaaatagcaattaagcc 14829170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 9311063 - 9311020
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  9311063 gataccaaaaaattagataagggactaaaatagcaattaagcct 9311020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 19951967 - 19952022
Alignment:
Q  156 caaatatgagtaagtcatctacgtagagatatatggatgtgtaaatgttattatca 211  Q
    |||||||||| ||||||||||| |||||| |||||  |||||||||||||||||||    
T  19951967 caaatatgagcaagtcatctacatagagacatatgattgtgtaaatgttattatca 19952022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 14819391 - 14819429
Alignment:
Q  112 caaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  14819391 caaaaaattagttaagggactaaaatagcaattaagcct 14819429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 19432278 - 19432343
Alignment:
Q  156 caaatatgagtaagtcatctacgtagagatatatggatgtgtaaatgttattatcatatttataat 221  Q
    |||||||||| ||||||||||| |||||| |||||  |||| ||||||| ||||||||||| ||||    
T  19432278 caaatatgagcaagtcatctacatagagacatatgattgtgcaaatgtttttatcatatttgtaat 19432343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 19568428 - 19568493
Alignment:
Q  156 caaatatgagtaagtcatctacgtagagatatatggatgtgtaaatgttattatcatatttataat 221  Q
    |||||||||| ||||||||||| |||||| |||||  |||| ||||||| ||||||||||| ||||    
T  19568428 caaatatgagcaagtcatctacatagagacatatgattgtgcaaatgtttttatcatatttgtaat 19568493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 39270810 - 39270854
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||    
T  39270810 gataccaaaaaataagttaagggacgaaaatagcaattaagcctt 39270854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 9312192 - 9312231
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaa 146  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  9312192 gataccaaaaaattagttaaaggactaaaatagcaattaa 9312231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 39567105 - 39567062
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  39567105 gataccaaaaaattagttaagggacgaaaataacaattaagcct 39567062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 45378564 - 45378605
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagc 148  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  45378564 gataccaaaaaattatttaagggacgaaaatagcaattaagc 45378605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 39568524 - 39568564
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaag 147  Q
    ||||| |||||| |||||||||||| |||||||||||||||    
T  39568524 gatactaaaaaattagttaagggacaaaaatagcaattaag 39568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 44633790 - 44633830
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaag 147  Q
    |||||||||||| ||||||||| || |||||||||||||||    
T  44633790 gataccaaaaaattagttaaggaaccaaaatagcaattaag 44633830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 5522026 - 5522087
Alignment:
Q  157 aaatatgagtaagtcatctacgtagagatatatggatgtgtaaatgttattatcatatttat 218  Q
    |||||| |||||||| |||||||||||| ||||| || || |||||||||||||||||||||    
T  5522026 aaatattagtaagtcgtctacgtagagacatatgtatttgcaaatgttattatcatatttat 5522087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 29751139 - 29751200
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    |||||||| || || | ||||||||| || ||||||||||||||||||||||||||||||||    
T  29751139 agttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcctt 29751200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 21611957 - 21611914
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  21611957 gataccaaaaaattagttaagggacgaaaatagcaattaagcct 21611914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 29744840 - 29744781
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||| || || | ||||||||| || ||||||||||||||||||||||||||||||    
T  29744840 agttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 29744781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 19480427 - 19480492
Alignment:
Q  156 caaatatgagtaagtcatctacgtagagatatatggatgtgtaaatgttattatcatatttataat 221  Q
    |||||||||| ||||||||||| |||||| |||||  |||| ||||||| ||||||||||| ||||    
T  19480427 caaatatgaggaagtcatctacatagagacatatgattgtgcaaatgtttttatcatatttgtaat 19480492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 14403731 - 14403687
Alignment:
Q  106 tgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  14403731 tgataccaacaaattaggtaagggactaaaatagcaattaagcct 14403687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 5660207 - 5660249
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| ||||| |||||| |||||||||||||||||    
T  5660207 gataccaaaaaattagtttagggacgaaaatagcaattaagcc 5660249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 21282859 - 21282814
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagccttc 152  Q
    ||||| |||||| || ||||||||| ||||||||||||||||||||    
T  21282859 gatacaaaaaaattaattaagggacgaaaatagcaattaagccttc 21282814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 21283922 - 21283962
Alignment:
Q  110 accaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  21283922 accaaaaaattagttaagggacgaaaataacaattaagcct 21283962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 756529 - 756485
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcctt 151  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  756529 gataccaaaaaattagttaagggacgaaaatagcaattaagcctt 756485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 51645970 - 51646030
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||| || || | |||||||||||| ||| |||||||||||||||||||||||||||    
T  51645970 agttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcct 51646030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 36220616 - 36220659
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| ||||||||| |||||||||||||||||||||    
T  36220616 gataccaaaaaattagttaaggtactaaaatagcaattaagcct 36220659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 50551413 - 50551468
Alignment:
Q  90 agttatggaactaacctgataccaaaaaactagttaagggactaaaatagcaatta 145  Q
    |||||||||||||| | |||||||||||| || |||||||||||||||| ||||||    
T  50551413 agttatggaactaaaccgataccaaaaaattaattaagggactaaaataacaatta 50551468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 702666 - 702708
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  702666 gataccaaaaaattagttaagggacgaaaatagcaattaagcc 702708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 770965 - 771007
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  770965 gataccaaaaaattagttaagggacgaaaatagcaattaagcc 771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 35060469 - 35060511
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  35060469 gataccaaaaaattagttaagggacgaaaatagcaattaagcc 35060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 11038618 - 11038577
Alignment:
Q  108 ataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  11038618 ataccaaaaaattagctaagggactaaaatagcaattaagcc 11038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 35055375 - 35055330
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagccttc 152  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||    
T  35055375 gataccaaaaaattagttaagggacgaaaataacaattaagccttc 35055330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 16039694 - 16039734
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaag 147  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  16039694 gataccaaaaaattagttaagggacaaaaatagcaattaag 16039734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 11039745 - 11039788
Alignment:
Q  106 tgataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    ||||||||||||| |||||||  |||||||||||||||||||||    
T  11039745 tgataccaaaaaattagttaaatgactaaaatagcaattaagcc 11039788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 16038317 - 16038274
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  16038317 gataccaaaaaattagttaagggacgaaaataacaattaagcct 16038274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 701675 - 701633
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    ||||||||||||  ||||||||||| |||||||||||||||||    
T  701675 gataccaaaaaataagttaagggacgaaaatagcaattaagcc 701633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 769974 - 769932
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcc 149  Q
    ||||||||||||  ||||||||||| |||||||||||||||||    
T  769974 gataccaaaaaataagttaagggacgaaaatagcaattaagcc 769932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 36219442 - 36219408
Alignment:
Q  114 aaaaactagttaagggactaaaatagcaattaagc 148  Q
    ||||| |||||||||||||||||||||||||||||    
T  36219442 aaaaattagttaagggactaaaatagcaattaagc 36219408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 19718906 - 19718949
Alignment:
Q  107 gataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  19718906 gataccaaaaaattagttaaaggactaaaatagcaattaagcct 19718949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 13585980 - 13585915
Alignment:
Q  156 caaatatgagtaagtcatctacgtagagatatatggatgtgtaaatgttattatcatatttataat 221  Q
    |||||||||| ||||||||||| |||||| |||||  |||| || |||| ||||||||||| ||||    
T  13585980 caaatatgagcaagtcatctacatagagacatatgattgtgcaagtgtttttatcatatttgtaat 13585915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 14306 - 14269
Alignment:
Q  113 aaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||| |||||||||||||||||||||||||||||||    
T  14306 aaaaaattagttaagggactaaaatagcaattaagcct 14269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 123465 - 123423
Alignment:
Q  108 ataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||    
T  123465 ataccaagaaattagttaagggacgaaaatagcaattaagcct 123423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 134341 - 134299
Alignment:
Q  108 ataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||    
T  134341 ataccaagaaattagttaagggacgaaaatagcaattaagcct 134299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 129434 - 129478
Alignment:
Q  106 tgataccaaaaaactagttaagggactaaaatagcaattaagcct 150  Q
    |||||||||||||  ||||||||||| |||||| |||||||||||    
T  129434 tgataccaaaaaataagttaagggacgaaaataacaattaagcct 129478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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