View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_69 (Length: 251)
Name: NF2018_low_69
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 40641393 - 40641173
Alignment:
| Q |
4 |
cttcttcaaaactaaacaatggaatgtgttgcattgtattccattccattcattttatgcaaatctaaacaatggaatctaattaccattccatctcatc |
103 |
Q |
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| T |
40641393 |
cttcttcaaaactaaacaatggactgtgttgcattgtattccattccattcattttatgcaaatctaaacaatggaatctaattaccattccattccatc |
40641294 |
T |
|
| Q |
104 |
tcatctcatctgatcaatccaaacatggactaagaagaggttaaatacataaaaagaagaggtaaaatcaacgataaatttgggaaattgaattttatat |
203 |
Q |
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| T |
40641293 |
tcatctcatctcatcaatccaaacgtggcctaagaacaggttaaatacataaaaagaagaggtaaaatcaacgataaatttgggaaattgaattttatat |
40641194 |
T |
|
| Q |
204 |
ttattcattacttggaatttg |
224 |
Q |
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||||||||||||||||||||| |
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| T |
40641193 |
ttattcattacttggaatttg |
40641173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 2269943 - 2269990
Alignment:
| Q |
41 |
attccattccattcattttatgcaaatctaaacaatggaatctaatta |
88 |
Q |
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|||| ||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
2269943 |
attctatttcattcattttatgcaaatctaaacaatagaatctaatta |
2269990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 11617283 - 11617243
Alignment:
| Q |
41 |
attccattccattcattttatgcaaatctaaacaatggaat |
81 |
Q |
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| T |
11617283 |
attccattccattcattttttgcaaaaccaaacaatggaat |
11617243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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