View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_low_7 (Length: 611)

Name: NF2018_low_7
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_low_7
NF2018_low_7
[»] chr5 (3 HSPs)
chr5 (45-526)||(14274740-14275222)
chr5 (57-156)||(39173529-39173628)
chr5 (122-176)||(10813151-10813205)
[»] chr3 (5 HSPs)
chr3 (46-524)||(51140100-51140576)
chr3 (45-203)||(40927306-40927464)
chr3 (122-169)||(52964156-52964203)
chr3 (122-169)||(54548333-54548380)
chr3 (122-163)||(38475645-38475686)
[»] chr6 (2 HSPs)
chr6 (57-521)||(21729772-21730231)
chr6 (57-326)||(14453346-14453611)
[»] chr1 (6 HSPs)
chr1 (222-520)||(14648297-14648593)
chr1 (57-206)||(14650984-14651130)
chr1 (57-206)||(14660775-14660921)
chr1 (122-169)||(28037673-28037720)
chr1 (122-176)||(33978188-33978242)
chr1 (123-176)||(27643376-27643429)
[»] chr2 (3 HSPs)
chr2 (59-324)||(8323479-8323741)
chr2 (119-176)||(4244400-4244457)
chr2 (122-202)||(36756962-36757042)
[»] chr4 (4 HSPs)
chr4 (526-593)||(11991118-11991184)
chr4 (122-175)||(5185486-5185539)
chr4 (122-179)||(38761390-38761447)
chr4 (122-201)||(54421415-54421494)
[»] scaffold0996 (1 HSPs)
scaffold0996 (122-203)||(1554-1635)
[»] chr8 (2 HSPs)
chr8 (123-203)||(11629494-11629574)
chr8 (123-176)||(16484161-16484214)
[»] chr7 (2 HSPs)
chr7 (124-203)||(513846-513925)
chr7 (122-174)||(27745736-27745788)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 45 - 526
Target Start/End: Original strand, 14274740 - 14275222
Alignment:
Q  45 gagtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctc 144  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  14274740 gagtaaaattaaaattaatacatttcattaataattatagagtacaaatcatgtggtacaatataatagatatgagaactaggatgagataaggatgctc 14274839  T
Q  145 tagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtc 244  Q
    || |||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14274840 taactatcctatgtgcaactctatttgcttgctttcgaatgaacgacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggcc 14274939  T
Q  245 cccgagctcagtgtggatggttgaagaggagtttatggcttctgcaagcgacttgttgtccttttcaaatataacattgtggaaaccgatcgtaaaatag 344  Q
    |||||||||| ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||     
T  14274940 cccgagctcattgtggattgttgaagaagagcttatggcttctgcaagcgacttgttgtccttttcaaacataacattgtggaaaccgatcgtgaaataa 14275039  T
Q  345 ccatgttgattgcttc-aagaaatgtgatagcttctgcttctaggacaaatatataggtgtgtaggtgggcagatttccccatcaagaagtggcccacaa 443  Q
    || ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  14275040 ccgtgttgattgcttcaaaaaaatgtgatagcttatgcttctaggacaaatatataggtgtgtaggtgggcagattttcccatcaagaagtggcccacag 14275139  T
Q  444 agttccagaagcacattccatatccaaatatgttattgtggaatattatggtgtctacattacatttgatcacaccagctgat 526  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14275140 agttccagaagcacattccatatcctaatgtgttattgtggaatattatggtgtctacattacatttgatcacaccagctgat 14275222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 39173529 - 39173628
Alignment:
Q  57 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 156  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||| ||  |||||||||||||||||||||| ||||||| ||||    
T  39173529 aattaatgcatttcattaataattatagagtacacatcatgtggaacaatataaaagatatgaaggctaggatgagataaggatgctttagctatgctat 39173628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 10813151 - 10813205
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 176  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  10813151 gctaggatgagataaggaagctctagctatactatgagcaaccctattagcttgc 10813205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 46 - 524
Target Start/End: Original strand, 51140100 - 51140576
Alignment:
Q  46 agtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctct 145  Q
    ||||||| || ||||||| |||||||||||||||||||||||||| ||||| || || ||||||| ||||| | | |||||||||  |||||||||||||    
T  51140100 agtaaaagcagaattaatgcatttcattaataattatagagtacagatcatctgatacaatataaaagatatgggggctaggatggcataaggatgctct 51140199  T
Q  146 agctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtcc 245  Q
    |||||| ||||||||||||||||| |||||||||| ||| ||| |||||| ||||||||| ||||| ||||||||||||||||||||| ||| |||||||    
T  51140200 agctatgctatgtgcaaccctattcgcttgcttccgaataaacgacactataaagtcgaagttggtagccaagagacccctacactgaactagcaggtcc 51140299  T
Q  246 ccgagctcagtgtggatggttgaagaggagtttatggcttctgcaagcgacttgttgtccttttcaaatataacattgtggaaaccgatcgtaaaatagc 345  Q
    ||||||||| |||||| || |||||| ||  ||||||| ||||||||| ||||| ||||  ||||||| |||||||||||| |||| |  || |||| ||    
T  51140300 ccgagctcattgtggaaggatgaagaagaaattatggcatctgcaagcaacttgctgtcagtttcaaacataacattgtggtaaccaa--gtgaaatggc 51140397  T
Q  346 catgttgattgcttcaagaaatgtgatagcttctgcttctaggacaaatatataggtgtgtaggtgggcagatttccccatcaagaagtggcccacaaag 445  Q
    | ||||||||||| |||| ||||  | |||||||||||||||||||||||   ||| ||| |||||||||||||||||||||||||||||||||||| ||    
T  51140398 cgtgttgattgctgcaagcaatgcaagagcttctgcttctaggacaaatactgaggagtgaaggtgggcagatttccccatcaagaagtggcccacagag 51140497  T
Q  446 ttccagaagcacattccatatccaaatatgttattgtggaatattatggtgtctacattacatttgatcacaccagctg 524  Q
    || | ||| |||||||  ||||| |   |||| ||||||||||||   | |||||||||||||||||||||||||||||    
T  51140498 tttcggaaacacattctgtatcctatcgtgttgttgtggaatattgcagcgtctacattacatttgatcacaccagctg 51140576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 40927306 - 40927464
Alignment:
Q  45 gagtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctc 144  Q
    |||||||| || | ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| | ||| | | | |||||||| ||||||||||||    
T  40927306 gagtaaaagcatagttaatgcatttcattaataattatagagtacagatcatctggtacaatataaaaaatatgggggataggatgacataaggatgctc 40927405  T
Q  145 tagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 203  Q
    ||| ||| |||| ||||||||||||||||||| | | ||| ||| ||||||||||||||    
T  40927406 tagttatgctatatgcaaccctatttgcttgccttcgaataaacgacactacaaagtcg 40927464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 52964156 - 52964203
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 169  Q
    |||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  52964156 gctaggatgagataaggaagatctagctatactatgagcaaccctatt 52964203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 54548333 - 54548380
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 169  Q
    |||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  54548333 gctaggatgagataaggaagctctagctatactatgagcaactctatt 54548380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 38475686 - 38475645
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaac 163  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  38475686 gctagggtgagataaggatgctctagttatactatgtgcaac 38475645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 57 - 521
Target Start/End: Original strand, 21729772 - 21730231
Alignment:
Q  57 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 156  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | |||||||||||||||||||| | ||||||| ||||    
T  21729772 aattaatgcatttcattaataattatagagtacacatcatgtggtacaatataaaagatatgggggctaggatgagataaggatgttgtagctatgctat 21729871  T
Q  157 gtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtccccgagctcagt 256  Q
    |||||||| |||||| |||| ||| ||||||| |||||||||||||||||   || | |||||| ||||||| |||| ||| ||||||||| |||||  |    
T  21729872 gtgcaaccttatttggttgcctccgaatgaacgacactacaaagtcgaaa---gtagacaagaggcccctactctgaactagcaggtccccaagctcgtt 21729968  T
Q  257 gtggatggttgaagaggagtttatggcttctgcaagcgacttgttgtccttttcaaatataacattgtggaaaccgatcgtaaaatagccatgttgattg 356  Q
    ||| |  | ||||||  |||||||||| |||||||| |||||||||||  ||||||| |||||||||||| |||| |  ||  ||||| | |||||||||    
T  21729969 gtgtaaaggtgaagaatagtttatggcatctgcaagtgacttgttgtctgtttcaaacataacattgtggtaaccaa--gtggaatagtcgtgttgattg 21730066  T
Q  357 cttcaagaaatgtgatagcttctgcttctaggacaaatatataggtgtgtaggtgggcagatttccccatcaagaagtggcccacaaagttccagaagca 456  Q
    || |||| ||||  ||||||||| ||||||||||  |||   ||| ||| | ||||||||| |||||||||||||||||||||| | |||||  ||| ||    
T  21730067 ctgcaagcaatgcaatagcttctacttctaggactgatactgaggagtgaatgtgggcagaattccccatcaagaagtggcccaaagagttctggaaaca 21730166  T
Q  457 cattccatatccaaatatgttattgtggaatattatggtgtctacattacatttgatcacaccag 521  Q
    ||||   ||||| |   |||||||||||||||||     ||||||||||||||| ||||||||||    
T  21730167 cattttgtatcctaccgtgttattgtggaatattgcaacgtctacattacattttatcacaccag 21730231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 14453346 - 14453611
Alignment:
Q  57 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 156  Q
    ||||||||||||||||||||||     ||||||| |||||||| || ||||||| ||||| | | |||||||||||||||||||||||||||||| ||||    
T  14453346 aattaatacatttcattaataa-----gagtacacatcatgtgttacaatataaaagatatgggggctaggatgagataaggatgctctagctatactat 14453440  T
Q  157 ----gtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtccccgagct 252  Q
        |||||||| ||||||||||| ||| |||||||||||||||||||||||||   || ||||||||  ||||||||||| ||| ||||||||| ||||    
T  14453441 atatgtgcaaccttatttgcttgcctccgaatgaacaacactacaaagtcgaaa---gtagccaagagggccctacactgaactagcaggtccccaagct 14453537  T
Q  253 cagtgtggatggttgaagaggagtttatggcttctgcaagcgacttgttgtccttttcaaatataacattgtgg 326  Q
    |  |||||| |  |||||| ||||||||||| ||||||||||||||| ||||  ||||||| ||||||||||||    
T  14453538 cgttgtggaagagtgaagaagagtttatggcatctgcaagcgacttgctgtctgtttcaaacataacattgtgg 14453611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 222 - 520
Target Start/End: Complemental strand, 14648593 - 14648297
Alignment:
Q  222 cccctacactgagctatcaggtccccgagctcagtgtggatggttgaagaggagtttatggcttctgcaagcgacttgttgtccttttcaaatataacat 321  Q
    |||||||||||| ||| ||||||||| |||||  |||||| || |||||| ||||||||||| ||||||||||||||| ||||  ||||||| | |||||    
T  14648593 cccctacactgaactagcaggtccccaagctcgttgtggaagggtgaagaagagtttatggcatctgcaagcgacttgctgtctgtttcaaacagaacat 14648494  T
Q  322 tgtggaaaccgatcgtaaaatagccatgttgattgcttcaagaaatgtgatagcttctgcttctaggacaaatatataggtgtgtaggtgggcagatttc 421  Q
    ||||| |||| |  || |||||||| ||||||||||| |||| ||||  ||||||||||||||||| ||  |||   ||  ||| ||||| |||||||||    
T  14648493 tgtggtaaccaa--gtgaaatagccgtgttgattgctgcaagcaatgcaatagcttctgcttctagtactgatactgagaagtgaaggtgtgcagatttc 14648396  T
Q  422 cccatcaagaagtggcccacaaagttccagaagcacattccatatccaaatatgttattgtggaatattatggtgtctacattacatttgatcacacca 520  Q
    ||||||||||||||||||||| | || | ||| |||||||| ||||| |   |||||||||||||||||     |||||||||||||||||||||||||    
T  14648395 cccatcaagaagtggcccacagattttcggaaacacattccgtatcctaccgtgttattgtggaatattgcaacgtctacattacatttgatcacacca 14648297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 14651130 - 14650984
Alignment:
Q  57 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 156  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | ||||||||||||||   ||||||||||||| ||||    
T  14651130 aattaatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatgggggctaggatgagata---atgctctagctatgctat 14651034  T
Q  157 gtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaa 206  Q
    |||||||| ||||||||||| ||| ||||||| |||||||||||||||||    
T  14651033 gtgcaaccttatttgcttgcctccgaatgaacgacactacaaagtcgaaa 14650984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 14660921 - 14660775
Alignment:
Q  57 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 156  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | ||||||||||||||   ||||||||||||| ||||    
T  14660921 aattaatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatgggggctaggatgagata---atgctctagctatgctat 14660825  T
Q  157 gtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaa 206  Q
    |||||||| ||||||||||| ||| ||||||| |||||||||||||||||    
T  14660824 gtgcaaccttatttgcttgcctccgaatgaacgacactacaaagtcgaaa 14660775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 28037720 - 28037673
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 169  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||    
T  28037720 gctaggatgagataaagaagctctagctatactatgagcaaccctatt 28037673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 33978188 - 33978242
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 176  Q
    |||||||||| ||||||| |||||||| || ||||| ||||||||||| ||||||    
T  33978188 gctaggatgacataaggaagctctagcaatactatgagcaaccctattagcttgc 33978242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 27643376 - 27643429
Alignment:
Q  123 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 176  Q
    ||||| |||||||||||||||||||| || ||||| |||||| |||| ||||||    
T  27643376 ctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgc 27643429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 59 - 324
Target Start/End: Original strand, 8323479 - 8323741
Alignment:
Q  59 ttaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctatgt 158  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| | | ||||| ||||| | | | |||||||||||||||||||||||| ||| ||||||    
T  8323479 ttaatccatttcattaataattatagcgtacacatcatgtggaacattataaaagatatgggggttaggatgagataaggatgctctagttatgctatgt 8323578  T
Q  159 gcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtccccgagctcagtgt 258  Q
    |||||  |||||| |||  | | ||||||| | |||||||||||||||   ||  |||||||||||||||||||| ||| ||||||||| |||||  |||    
T  8323579 gcaactttatttgtttgtcttcgaatgaacgatactacaaagtcgaaa---gtaaccaagagacccctacactgaactagcaggtccccaagctcgttgt 8323675  T
Q  259 ggatggttgaagaggagtttatggcttctgcaagcgacttgttgtccttttcaaatataacattgt 324  Q
    | |  | |||||| || |||||||| ||||||||| ||||| | ||  ||||||| ||||||||||    
T  8323676 gtaaaggtgaagaagaatttatggcatctgcaagcaacttgctctctgtttcaaacataacattgt 8323741  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 4244457 - 4244400
Alignment:
Q  119 agagctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 176  Q
    |||||||||||||||||| |||||||||||||| ||||| ||| | ||||||||||||    
T  4244457 agagctaggatgagataaagatgctctagctatactatgagcagctctatttgcttgc 4244400  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 36756962 - 36757042
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtc 202  Q
    ||||||||| |||||||| |||||||| || ||||| |||||  |||| |||||| ||| ||| ||| |||||||||||||    
T  36756962 gctaggatgtgataaggaagctctagcaatactatgagcaactttattagcttgcctccgaataaacgacactacaaagtc 36757042  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 526 - 593
Target Start/End: Original strand, 11991118 - 11991184
Alignment:
Q  526 tatacatttcttagtgaaaaagatgaataattannnnnnnncttataaataataggagaaactgaaaa 593  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  11991118 tatacatttcttagtgaaaaagatgaataatta-tttttttcttataaataataggagaaactgaaaa 11991184  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 5185486 - 5185539
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttg 175  Q
    |||| ||||||||||||| ||||||||||| ||||| ||||||||||| |||||    
T  5185486 gctaagatgagataaggaagctctagctatactatgagcaaccctattagcttg 5185539  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 38761390 - 38761447
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttc 179  Q
    |||||| |||||||||||||||||||| || ||||| |||||| |||| |||||||||    
T  38761390 gctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgcttc 38761447  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 54421415 - 54421494
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagt 201  Q
    ||||||||| |||||||| |||||||| || |||||  ||||| |||| |||||| ||| ||| ||| ||||||||||||    
T  54421415 gctaggatgtgataaggaagctctagcaatactatgaccaaccttattagcttgcctccgaataaacgacactacaaagt 54421494  T

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Target: scaffold0996 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 1554 - 1635
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 203  Q
    |||||||||| ||||||| |||||||| || ||||| ||||||||||| |||||| ||| ||   || ||||||||||||||    
T  1554 gctaggatgacataaggaagctctagcaatactatgagcaaccctattagcttgcctccgaacatacgacactacaaagtcg 1635  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 11629574 - 11629494
Alignment:
Q  123 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 203  Q
    ||||| |||||||| ||||||||||| || ||||| ||||| |||||||||||| ||| ||   || ||||||||||||||    
T  11629574 ctagggtgagataatgatgctctagcaatactatgagcaactctatttgcttgcctcctaacatacgacactacaaagtcg 11629494  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 16484161 - 16484214
Alignment:
Q  123 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 176  Q
    ||||| |||||||||||||||||||| || ||||| |||||| |||| ||||||    
T  16484161 ctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgc 16484214  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 513925 - 513846
Alignment:
Q  124 taggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 203  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||| |||||| ||| ||   || ||||||||||||||    
T  513925 taggatgacataaggaagctctagcaatactatgagcaaccctattagcttgcctccaaacatacgacactacaaagtcg 513846  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 27745736 - 27745788
Alignment:
Q  122 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgctt 174  Q
    |||||| |||||||||||||||||||| || ||||| |||||| |||| ||||    
T  27745736 gctagggtgagataaggatgctctagcgatactatgagcaaccttattagctt 27745788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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