View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_74 (Length: 247)
Name: NF2018_low_74
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_74 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 31889688 - 31889926
Alignment:
| Q |
9 |
agcagagatgataggttcgacttaaaggggcttgttcacaaggcgatgttattgactggaaaatttaatctctctgattatctaccttggctacgcccgt |
108 |
Q |
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| T |
31889688 |
agcaaagatgataggttcgacttaaagggtattgttcacaaggcgatgttattgactggaaaatttaatctctctgattatctaccttggctacgcccgt |
31889787 |
T |
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| Q |
109 |
ttgatctccaggtatgatatacacagtttcaattctaacaatttattgtctaacatattacttcaattaatatttttctattagttgaaatttgtatgag |
208 |
Q |
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| T |
31889788 |
ttgatctccaggtatgatatacacagtttcaattctaacaatttattgtctaacatattacttcaattaatatttttctattagttgaaatttgtatgag |
31889887 |
T |
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| Q |
209 |
tctcaccaaatttaattgatatcaacatgacttttaact |
247 |
Q |
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| T |
31889888 |
tctcaccaaatttaattgatatcaacatgacttttaact |
31889926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 31867400 - 31867199
Alignment:
| Q |
24 |
ttcgacttaaaggggcttgttcacaagg-cgatgttattgactggaaaatttaatctctctgattatctaccttggctacgcccgtttgatctccaggta |
122 |
Q |
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| T |
31867400 |
ttcgacttaaaggggcttgttcacgagggcgatgttattgactggaaaatttaatctgtctgattatctaccttggctacgcccgtttgatcttcagata |
31867301 |
T |
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| Q |
123 |
tgatatacacagtttcaattc---taacaatttattgtctaacatattacttcaattaatatttttctattagttgaaatttgtatgagtctcaccaaat |
219 |
Q |
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| T |
31867300 |
tgatatacatgatatcaattctattagcaa--tatagtttaacgtattatt----ttaatatttttctattagacgaaatttgtatgagtctcatcaaat |
31867207 |
T |
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| Q |
220 |
ttaattga |
227 |
Q |
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|||||||| |
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| T |
31867206 |
ttaattga |
31867199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 31892505 - 31892597
Alignment:
| Q |
14 |
agatgataggttcgacttaaaggggcttgttcacaaggcgatgttattgactggaaaatttaatctctctgattatctaccttggctacgccc |
106 |
Q |
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| T |
31892505 |
agatgacaggttcgacttaaaggggcttgttcacgaggcaatgttattgaccggaaaatttaatctgtctgactatctaccttggctacgccc |
31892597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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