View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_75 (Length: 245)
Name: NF2018_low_75
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_75 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 21223265 - 21223413
Alignment:
| Q |
1 |
atataaaaagatgggtatgtaatttgctaggctcatattgataattgtttttgcagcaatatgaacctggatagatatacagctcctcctccaaagaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21223265 |
atataaaaagatgggtatgtaatttgctaggctcatattgataattgtttttgcagcaatatgaacctggata----tacagctcctcctccaaagaaat |
21223360 |
T |
|
| Q |
101 |
caaagataaatgttgaagcaatgtccataaggtactttaccgcattaattttt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21223361 |
caaagataaatgttgaagcaatgtccataaggtacttaaccgcattaattttt |
21223413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 21223466 - 21223508
Alignment:
| Q |
185 |
agactaatttcttgagcattgtggaacctaaataggcgacaag |
227 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
21223466 |
agactaatttcttgagcattgtgggatctaaataggcgacaag |
21223508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 44757093 - 44757226
Alignment:
| Q |
6 |
aaaagatgggtatgtaatttgctaggctcatattgataattgtttttgcagcaatatgaacctggatagatatacagctcctcctccaaagaaatcaaag |
105 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || |
|
|
| T |
44757093 |
aaaagatgggtttgtaatttgctaagcttatattgataattgtttttgcagcaatatgaacccggata----tacagctcctcctccaaagaaatcagag |
44757188 |
T |
|
| Q |
106 |
ataaatgttgaagcaatgtccataaggtactttaccgc |
143 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44757189 |
ataaatgatgaagcaatgtccataaggtactttaccgc |
44757226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 2044526 - 2044489
Alignment:
| Q |
185 |
agactaatttcttgagcattgtggaacctaaataggcg |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
2044526 |
agactaatctcttgagcattgtggaacccaaataggcg |
2044489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 39043272 - 39043243
Alignment:
| Q |
44 |
attgtttttgcagcaatatgaacctggata |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39043272 |
attgtttttgcagcaatatgaacctggata |
39043243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University