View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_76 (Length: 240)
Name: NF2018_low_76
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_76 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 433195 - 432970
Alignment:
| Q |
1 |
cagaatttgaactacaattgtaaatgttttatgtttatcctaatgaattagctaggaagaaatacatgccttccattagaagtgtgtcactgttgtatgc |
100 |
Q |
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| T |
433195 |
cagaatttgaactacaattgtaaatgttttatgtttatcctaatgaattagctaggaggaaatacatgccttccattagaaatgt--cactgttgtatgc |
433098 |
T |
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| Q |
101 |
attgtaataatcaatgatgtcttttggctcttgtgattttagaaactatgcattatgtgtgcaagtaatacatatgagtata--attaagaatttagagt |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
433097 |
cttgtaataatcaatgatatcttttggctcttgtgattttagaaactatgcattatgtgtgcaagtaatacatatgagtataatattaagaatttagagt |
432998 |
T |
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| Q |
199 |
cttgattatgtatcttcatctaattgtt |
226 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
432997 |
cttgattatgtatcttcatctaattgtt |
432970 |
T |
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