View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_80 (Length: 237)
Name: NF2018_low_80
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_80 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 11313570 - 11313708
Alignment:
| Q |
101 |
tgataccataaagagaatgcagaagcgttattttatttgatctgtcaatgagtacaatttatacatgg--aaaaaacatagaagcatatctagaatattc |
198 |
Q |
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| T |
11313570 |
tgataccataaagagaatgcagaagcgttattttatttgatctgtcaatgagtacaatttatacatggaaaaaaaacatagaagcatatctagaatattc |
11313669 |
T |
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| Q |
199 |
ctatgttgttgactcacgaaatctgccttgacaatttct |
237 |
Q |
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| T |
11313670 |
caatgttgttgactcatgaaatctgccttgacaatttct |
11313708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 11308768 - 11308898
Alignment:
| Q |
109 |
taaagagaatgcagaagcgttattttatttgatctgtcaatgagtacaatttatacatgg--aaaaaacatagaagcatatctagaatattcctatgttg |
206 |
Q |
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| T |
11308768 |
taaagagaatgcagaagcgttattttatttgatctgtcaatgagtacaatttatacatggaaaaaaaacatagaagcatatctagaatattccaatgttg |
11308867 |
T |
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| Q |
207 |
ttgactcacgaaatctgccttgacaatttct |
237 |
Q |
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| T |
11308868 |
ttgactcatgaaatctgccttgacaatttct |
11308898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 11313282 - 11313364
Alignment:
| Q |
18 |
aagttctggttctgtttttggaagggatgtgttggtaatgcttgaagacatgatgtgtttggcttgcaagtttacaggctctg |
100 |
Q |
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| T |
11313282 |
aagttctggttctgtttttgggagggatgtgttggtaatgcttgaagacatgatgtgtttggcttgcaagtttacaggctctg |
11313364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 13445696 - 13445647
Alignment:
| Q |
185 |
tatctagaatattcctatgttgttgactcacgaaatctgccttgacaatt |
234 |
Q |
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| T |
13445696 |
tatctaaaatattcctttgttgttgacccatgaattctgccttgacaatt |
13445647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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