View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_82 (Length: 236)
Name: NF2018_low_82
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_82 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3938655 - 3938876
Alignment:
| Q |
1 |
acgggacggcccgtattaaagtaatttgnnnnnnngtaaagttttccttttgtttctttataactaatgcaaaatattaattcatataataaacatatat |
100 |
Q |
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| T |
3938655 |
acgggacggcccgtattaaagtaatttgtttttttgtaaagttttccttttgtttctttataactaatgcaaaatattaattcatataataaacatatat |
3938754 |
T |
|
| Q |
101 |
aggtttcactcttctttactgaaactccaaccaatccattccaaagatgtgttgatattaagctagtttcagagctttgtcatagaaaaggagctttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3938755 |
aggtttcactcttctttactgaaactccaaccaatccattccaaagatgtgttgatattaagctagtttcagagctttgtcatagaaaaggagctttggt |
3938854 |
T |
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| Q |
201 |
ttgcattgatggtacattttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3938855 |
ttgcattgatggtacattttct |
3938876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 2983427 - 2983521
Alignment:
| Q |
125 |
ctccaaccaatccattccaaagatgtgttgatattaagctagtttcagagctttgtcatagaaaaggagctttggtttgcattgatggtacattt |
219 |
Q |
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|||| ||||||||||||| ||||||||||| |||||||| |||||||| ||||| || | || || |||||| || |||||||||||||||| |
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| T |
2983427 |
ctcctaccaatccattcctgagatgtgttgacattaagctggtttcagaactttgccacaagaatggggctttgcttgtcattgatggtacattt |
2983521 |
T |
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