View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_85 (Length: 227)
Name: NF2018_low_85
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_85 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 17254044 - 17254167
Alignment:
| Q |
90 |
tagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttagtgacttgagcattctttaacttgtt |
189 |
Q |
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| T |
17254044 |
tagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttagttactttagaattctttaacttgtt |
17254143 |
T |
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| Q |
190 |
tctataatcttcatcgcttatatt |
213 |
Q |
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| T |
17254144 |
tctataatcttcatcgcttatatt |
17254167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 17247140 - 17247188
Alignment:
| Q |
90 |
tagaagtactcataataaccatgttattatccttgagagcactagaact |
138 |
Q |
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|||||||| ||||| |||||||||||| || |||||||||||||||||| |
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| T |
17247140 |
tagaagtagtcatagtaaccatgttataatacttgagagcactagaact |
17247188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 17247197 - 17247237
Alignment:
| Q |
135 |
aacttcttgtgacttgtcgcctagttttagtgacttgagca |
175 |
Q |
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| T |
17247197 |
aacttcttctgacttgtcctctagttttagtgacttgagca |
17247237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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