View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_88 (Length: 215)
Name: NF2018_low_88
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 2326442 - 2326246
Alignment:
| Q |
17 |
tgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccat |
116 |
Q |
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| T |
2326442 |
tgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcagaggcgaggttacgacggagggtacaccatgttgggccat |
2326343 |
T |
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| Q |
117 |
aaaaagcggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgag |
213 |
Q |
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| T |
2326342 |
aaaaagcggcgctgatgttgtgctggttgctagatatgagtttgtgactgggaagtgctttaggacgatcggagaagagagatgaattttgaacgag |
2326246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 2330154 - 2329959
Alignment:
| Q |
20 |
agaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaa |
119 |
Q |
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| T |
2330154 |
agaacccacttccgaatttcagagaatgatttgatcttagatggatgaagcatctcggaggcgaggttacgacggagagtacgccatgttggtccataaa |
2330055 |
T |
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| Q |
120 |
aagcggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagag |
215 |
Q |
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| T |
2330054 |
aagcggagctgatattgtgctggttgctggacatgagtttgttagtgggaagtgctttaggacgatcagagaagacggaggagttttgaacgagag |
2329959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 2320582 - 2320458
Alignment:
| Q |
23 |
acccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaaaag |
122 |
Q |
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| T |
2320582 |
acccacttccgaatttctgagaacgatttggttttggatggatgaagcatctcggaagcaaggttacgacggagggtacgccatgttgggccataaaaag |
2320483 |
T |
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| Q |
123 |
cggcgctgatgttgtgctggttgct |
147 |
Q |
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| T |
2320482 |
cggagctgatgttgtgttggttgct |
2320458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 2293262 - 2293071
Alignment:
| Q |
23 |
acccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaaaag |
122 |
Q |
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| T |
2293262 |
acccacttccgaatttctgagaacgatttgagtttggatggatgaagcatctcggaagcaaggttacgacgaagggtacgccatgttgggccataataag |
2293163 |
T |
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| Q |
123 |
cggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgaga |
214 |
Q |
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| T |
2293162 |
cggtgttgatgttgtgttggttgctggacaacattttggaagtaggaagagctgtagggcgatcagagaagatggatgagttttgaacgaga |
2293071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 2302881 - 2302757
Alignment:
| Q |
23 |
acccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaaaag |
122 |
Q |
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||||||||||||||||| ||||| |||||| | ||||| |||||||| |||||||| || ||||||| || |||||||||||||||||||||||||||| |
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| T |
2302881 |
acccacttccgaatttctgagaacgatttggttttggaaggatgaagtatctcggaagcaaggttacgacggagggtacgccatgttgggccataaaaac |
2302782 |
T |
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| Q |
123 |
cggcgctgatgttgtgctggttgct |
147 |
Q |
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| T |
2302781 |
cggagctgatgttgtgttggttgct |
2302757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 2309593 - 2309469
Alignment:
| Q |
23 |
acccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaaaag |
122 |
Q |
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||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||| | || ||||||| || ||||||||||||||||||||||||||||| |
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| T |
2309593 |
acccacttctgaatttctgagaacgatttgagtttggatggatgaagcatctcgaaagcaaggttacgacggagggtacgccatgttgggccataaaaag |
2309494 |
T |
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| Q |
123 |
cggcgctgatgttgtgctggttgct |
147 |
Q |
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||| | |||||||||| |||||||| |
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| T |
2309493 |
cggtgttgatgttgtgttggttgct |
2309469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 2350457 - 2350259
Alignment:
| Q |
17 |
tgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccat |
116 |
Q |
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||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| || || ||||| | || ||||| ||||||||||| |||| |
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| T |
2350457 |
tgtaggacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccat |
2350358 |
T |
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| Q |
117 |
aaaaagcggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagag |
215 |
Q |
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||||||||| |||||||||||| |||||||| || |||| |||| ||||||| ||| |||| ||||| ||||||| | ||| ||||||||||||| |
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| T |
2350357 |
aaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgagag |
2350259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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