View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_9 (Length: 587)
Name: NF2018_low_9
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 48166607 - 48167159
Alignment:
| Q |
18 |
aggtgaaaatagactaggttaaactttgctaggctgaacatgacttgctttgaaaatgttaggcttcaatctgtcctattagtctgccataggctcattt |
117 |
Q |
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| T |
48166607 |
aggtgaaaatagactaggttaaactttgctaggctgaacatgacttactttgaaaatgttaggcttcaatctgtcctattagtctgccataggctcattt |
48166706 |
T |
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| Q |
118 |
ttaaggtttgacctgactttttggtaagtccgtttaatagtctatttcacgannnnnnn-gacgaaaaatatacaccactaataatggtgtagactgtca |
216 |
Q |
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| T |
48166707 |
ttaaggtttgacctgactttttggtaagtccgtttaatagtctatttcacgattttttttgacgaaaaatatacaccactaataatggtgtagattgtca |
48166806 |
T |
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| Q |
217 |
taaataaactaacaatgaaattgacataatttcgttttgtgaacctagaatcatcaatgaagaaacttgtgttggcaatgttggtgatagctatcttagc |
316 |
Q |
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| T |
48166807 |
taaataaactaacaatgaaattgacataattttgttttgtgaacctagaatcatcaatgaagaaacttgtgttggcaatgttggtgatagctatcttagc |
48166906 |
T |
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| Q |
317 |
attattgattattgcttttctggtaaaatgtgtatcaaagaagaagcctgttaagaagcacgtccagttgaaacagatagctacttggtctggactttac |
416 |
Q |
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| T |
48166907 |
attattgattattgcttttctggtaaaatgtgtatcaaagaagaagcctgttaagaagcacgtccagttgaaacagatagctacttggtctggactttac |
48167006 |
T |
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| Q |
417 |
tggttcacaaaaactgaaattgaaaatgccatgaattttgaaaatgaaaagataaaccttggacgcgggagtgcaggtgaagtgtttagaggtgttttgc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48167007 |
tggttcacaaaaactgaaattgaaaatgccatgaattttgaaaatgaaaagataaaccttggacgcgggagtgcgggtgaagtgtttagaggtgttttgc |
48167106 |
T |
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| Q |
517 |
caagtggtcaagttgtggccatcaagcatttgacaaagagtaacacctctagt |
569 |
Q |
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| T |
48167107 |
caagtggtcaagttgtggccatcaagcatttgacaaagagtaacacctctagt |
48167159 |
T |
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