View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20190_low_1 (Length: 542)
Name: NF20190_low_1
Description: NF20190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20190_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 156 - 525
Target Start/End: Original strand, 7141214 - 7141583
Alignment:
| Q |
156 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa |
255 |
Q |
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| T |
7141214 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa |
7141313 |
T |
|
| Q |
256 |
ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141314 |
ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat |
7141413 |
T |
|
| Q |
356 |
ccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagt |
455 |
Q |
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| T |
7141414 |
ccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagt |
7141513 |
T |
|
| Q |
456 |
tagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagcacagaact |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141514 |
tagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagcacagaact |
7141583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 7141087 - 7141216
Alignment:
| Q |
1 |
caagagtgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagct |
100 |
Q |
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| T |
7141087 |
caagagtgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggtagccttgatgtccaattgacaatcaacaacatcaaagct |
7141186 |
T |
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| Q |
101 |
gtgatttgggttagtaacacttaacttata |
130 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7141187 |
gtgatttgggttagtaacacttaacttata |
7141216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 277 - 504
Target Start/End: Original strand, 7154105 - 7154332
Alignment:
| Q |
277 |
atttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggca |
376 |
Q |
| |
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||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | || ||| |
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| T |
7154105 |
atttcaggacgtatttgttgccggaactgatacaacatcgacaacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagca |
7154204 |
T |
|
| Q |
377 |
caagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattga |
476 |
Q |
| |
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||||||||| ||||| |||||||||| || ||| || |||||| |||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||| |
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| T |
7154205 |
caagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatga |
7154304 |
T |
|
| Q |
477 |
ggttacacccaccttctcctttgttggt |
504 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |
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|
| T |
7154305 |
ggttacacccaccttcacctttattggt |
7154332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 7152924 - 7153046
Alignment:
| Q |
7 |
tgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgatt |
106 |
Q |
| |
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|||| |||| || ||||||||| | |||||||||||| ||||||||||||||| | ||||||| || || | |||| |||||||||||||||||||||| |
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| T |
7152924 |
tgaagttgataacgaagatcttctagatgttcttttgcgagtccaacaaagtgataaccttgatatcaaaataacaaccaacaacatcaaagctgtgatt |
7153023 |
T |
|
| Q |
107 |
tgggttagtaacacttaacttat |
129 |
Q |
| |
|
||||||||| ||| | ||||||| |
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| T |
7153024 |
tgggttagttacaatgaacttat |
7153046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 7131652 - 7131732
Alignment:
| Q |
318 |
caacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcat |
398 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||||||| ||||| |||| ||| ||||||||||||||| ||||| |||||| |
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| T |
7131652 |
caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagcat |
7131732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 7130752 - 7130839
Alignment:
| Q |
20 |
gaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgattt |
107 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||| |||||||||||||||| ||| | | |||| | |||||||||||||||||||| |
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| T |
7130752 |
gaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt |
7130839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 319 - 490
Target Start/End: Complemental strand, 12425604 - 12425433
Alignment:
| Q |
319 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata |
418 |
Q |
| |
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||||||||| |||||||||||||| | |||||||| |||||||||| ||||||||||||||||||| ||||| |||| | || |||||| | |||| |
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| T |
12425604 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaata |
12425505 |
T |
|
| Q |
419 |
tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacct |
490 |
Q |
| |
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||||| | |||| || | ||||| | ||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
12425504 |
tatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacct |
12425433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 490
Target Start/End: Original strand, 12268081 - 12268252
Alignment:
| Q |
319 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata |
418 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||| || |||||||||| ||| |||||||||||| ||||| ||| | || |||||| | ||| |
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|
| T |
12268081 |
aacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatt |
12268180 |
T |
|
| Q |
419 |
tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacct |
490 |
Q |
| |
|
||||||| |||| | | |||| |||||||| |||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
12268181 |
tatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaaccctgaggttacacccacct |
12268252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 12438728 - 12438646
Alignment:
| Q |
281 |
caggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagt |
363 |
Q |
| |
|
|||||| ||||| ||||||||| || |||||| | ||||| |||||||||| | ||||||||| |||||||||||||||| |
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|
| T |
12438728 |
caggatatattttttgctggaagtgggacatcagctacaactttagaatgggccttttcagaaatgttgaaaaatccaagagt |
12438646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 499
Target Start/End: Complemental strand, 55958833 - 55958653
Alignment:
| Q |
319 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata |
418 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||| || | || || ||||| | || | |
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| T |
55958833 |
aacaatagactgggcaatgtcagagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaaca |
55958734 |
T |
|
| Q |
419 |
tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccaccttctcctttg |
499 |
Q |
| |
|
||||| | |||| || | |||| |||||||| || | ||||||||||||||| |||||||||| |||||| || ||||| |
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|
| T |
55958733 |
tatgagagtgatctacaagaacttagttacttgaattcagtgatcaaagaaactatgaggttacatccacctgctactttg |
55958653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 491
Target Start/End: Complemental strand, 55955274 - 55955105
Alignment:
| Q |
322 |
aatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatat |
421 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||| |||||| |||||| | ||| ||||| |||| | || || || | ||||||| |
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| T |
55955274 |
aatagagtgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatat |
55955175 |
T |
|
| Q |
422 |
gaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacctt |
491 |
Q |
| |
|
|| | |||| || | |||| |||||||| |||| ||||||||||||||| |||||||||||||||||| |
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| T |
55955174 |
gagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt |
55955105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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