View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20190_low_2 (Length: 438)
Name: NF20190_low_2
Description: NF20190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20190_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 45362794 - 45363087
Alignment:
| Q |
19 |
attgtcagtggagggtgaggatgagcacaagagaggggaggaaggtggagcaaaaacgatgccaccagcaagtataatgacgaggctgatattgataatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45362794 |
attgtcagtggagggtgaggatgagcacaagagaggggaggaaggtggggcaaaaacgatgccaccagcaagtataatgacgaggctgatattgataatg |
45362893 |
T |
|
| Q |
119 |
gtttggagaaaacttatcagaaacccaaacacatattcgagcattatcggcctaacttggtcactcatttcattcaggtggaatattgaaatgcctgtta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45362894 |
gtttggagaaaacttatcagaaacccaaacacatattcgagcattatcggcctaacttggtcactcatttcattcaggtggaatattgaaatgcctgtta |
45362993 |
T |
|
| Q |
219 |
tcatagaaaagtctatttccatattgtcagatgcagggcttggcatggccatgtacagtcttggttagtattcaatcaaactcaatggtgttta |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45362994 |
tcatagcaaagtctatttccatattgtcggatgcagggcttggcatggccatgttcagtcttggttagtattcaataaaactcaatggtgttta |
45363087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 45363237 - 45363316
Alignment:
| Q |
343 |
tttgctccttttcctttatgattctgttcatggcaggtctgttcatggctttgcaaccgaggattatagcatgaggtaat |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45363237 |
tttgctccttttcctttatgattctgttcatggcaggtctgttcatggctttgcaaccgaggattatagcatgtggtaat |
45363316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 25040218 - 25040338
Alignment:
| Q |
77 |
atgccaccagcaagtataatgacgaggctgatattgataatggtttggagaaaacttatcagaaacccaaacacatattcgagcattatcggcctaactt |
176 |
Q |
| |
|
||||||||||| ||| | ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| | || || || |||| |
|
|
| T |
25040218 |
atgccaccagctagtgtgatgacaaggcttatattgattatggtttggagaaaacttatcagaaatccaaacacttattctagcttaattggtctcactt |
25040317 |
T |
|
| Q |
177 |
ggtcactcatttcattcaggt |
197 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
25040318 |
ggtctttggtttcattcaggt |
25040338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 25040700 - 25040782
Alignment:
| Q |
201 |
atattgaaatgcctgttatcatagaaaagtctatttccatattgtcagatgcagggcttggcatggccatgtacagtcttggt |
283 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
25040700 |
atattgaaatgcctgccattatagcaaagtctatttccattctgtcagatgcaggacttggcatggctatgttcagtcttggt |
25040782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University