View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20190_low_3 (Length: 389)
Name: NF20190_low_3
Description: NF20190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20190_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 151 - 373
Target Start/End: Complemental strand, 8178980 - 8178760
Alignment:
| Q |
151 |
atagagtgtcgggtgattggatgagaatgtggaatcttcatatacctcaaaggatcaaagttttcttatggagggtgcttaggggtgttcttcctacgcg |
250 |
Q |
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| T |
8178980 |
atagagtgtcgggtgattggatgagaatgtggaatcttcatatacctcaaaggatcaaagttttcttatggagggtgcttaggggtgttcttcctacgcg |
8178881 |
T |
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| Q |
251 |
aatgagacttcaagatannnnnnntcccttgttcggattgctgcccccattgtgagaccaattatgagaatgattggcacgttttcatcggatgtgtagc |
350 |
Q |
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| T |
8178880 |
aatgagacttcaagata--gggggtcccttgttcggattgctgcccccattgtgagaccaattatgagaatgattggcacgttttcatcggatgtgtagc |
8178783 |
T |
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| Q |
351 |
agcgaaacaactatggattgaag |
373 |
Q |
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| T |
8178782 |
agcgaaacaagtatggattgaag |
8178760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 346
Target Start/End: Complemental strand, 37604713 - 37604399
Alignment:
| Q |
33 |
gcattaaccaacttagatggatcaaataagttgatatggaaattcaacaataaaggaatgtatacagtgaagtctgcgtacatgtatgctatggaaactc |
132 |
Q |
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| T |
37604713 |
gcattaaccaattcagacggagcagataagttaatatggaaattcattaacaaagggcattatacagcgaagtctgcatacatgtatgatatggaaactc |
37604614 |
T |
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| Q |
133 |
tcattgacaatgcggagtatagagtgtcgggtgattggatgagaatgtggaatcttcatatacctcaaaggatcaaagttttcttatggagggtgcttag |
232 |
Q |
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| T |
37604613 |
tcattcataatgtggagtatagaatgccgggagattggacgagaatgtggaatctgcacatacctcaacggatcaaagtttttttatggaggttgttgag |
37604514 |
T |
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| Q |
233 |
gggtgttcttcctacgc--gaatgagacttcaagatannnnnnntcccttgttcggattgctgcccccattgtgagaccaattatgagaatgattggcac |
330 |
Q |
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| T |
37604513 |
gggtgttctcccttcgcatatataagacttcaag-gaaggggggtcccttcttcggactactgccccttctgtgagaccaattatgagaatgattggcac |
37604415 |
T |
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| Q |
331 |
gttttcatcggatgtg |
346 |
Q |
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|||| |||||||||| |
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| T |
37604414 |
atttttatcggatgtg |
37604399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 49915113 - 49915161
Alignment:
| Q |
298 |
cattgtgagaccaattatgagaatgattggcacgttttcatcggatgtg |
346 |
Q |
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| T |
49915113 |
cattgtgagacaaattatgagaatgattggcatgtgtttataggatgtg |
49915161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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