View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20190_low_5 (Length: 371)
Name: NF20190_low_5
Description: NF20190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20190_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 31061153 - 31061508
Alignment:
| Q |
1 |
actagtattaagcgtcagaaaaataatttccacaaaacagaaatcaactttagttctaaactttcaaaacatataaaagtagtttacaaatggaatcctc |
100 |
Q |
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| T |
31061153 |
actagtattaagcgtcagaaaaataatttccacaaaacagaaatgaactttagttctaaactttcaaaacatataaaagtagtttacaaatggaatcctc |
31061252 |
T |
|
| Q |
101 |
tagtctagtaatacaattctttgatgaagatgctaatctcttttataaaatttcatcgactcatcagcaatttctctgtcatagtatttgacaaacaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31061253 |
tagtctagtaatacaattctttgatgaagatgctaatctcttttataaaatttcatcgactcatcagcaatttctctgtcatagtatttgacaaacaaat |
31061352 |
T |
|
| Q |
201 |
ttaaaaacctctcctctgccaaccttaaagctttaagtaatgagggtgttttcaacgtagaattcatatcttttatcttcattgctagaaacactcgagg |
300 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
31061353 |
ttaaaaacctctcctctgccaaccctaatgctttaagtaatgagggtgttttcaacgtagaattcatattttttatcttcattgctagaaacactcgtgg |
31061452 |
T |
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| Q |
301 |
cttcaaaactgtctccatgccaacaggaaaaatgggtactatcttagcttcaaact |
356 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31061453 |
cttcaaaacagtctccatgccaacaggaaaaatgggtactatcttagcttcaaact |
31061508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 3414037 - 3414355
Alignment:
| Q |
14 |
gtcagaaaaataatttccacaaaacagaaatcaactttagttctaaactt---tcaaaacatataaaagtagtttacaaatggaatcctctagtctagta |
110 |
Q |
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| T |
3414037 |
gtcagaaaaataattaccacaaaatagaaatcaaattcagctctaaacttatttcaaagcatataaaagtagttcagaaagggaatcctctagt-----a |
3414131 |
T |
|
| Q |
111 |
atacaattctttgatgaagatgctaatctctt----------------ttataaaatttcatcgactcatcagcaatttctctgtcatagtatttgacaa |
194 |
Q |
| |
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| |||||| |||||||| |||||||||||| |||||||||| ||| |||||||||||||||| | |||| | || |||||| |
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| T |
3414132 |
gtccaattccttgatgaaactgctaatctcttgacctgttttgtccttttataaaattccattaactcatcagcaatttccttatcatggcatctgacaa |
3414231 |
T |
|
| Q |
195 |
acaaatttaaaaacctctcctctgccaaccttaaagctttaagtaatgagggtgttttcaacgtagaattcatatcttttatcttcattgctagaaacac |
294 |
Q |
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|| ||| |||||||||||||| | || ||| || ||| |||||| |||||||||||||| |||||| ||||| || || |||||||||||||| ||| |
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| T |
3414232 |
acgtattgaaaaacctctcctcggacatcctcaatgctctaagtattgagggtgttttcatattagaatccatattttgtaccttcattgctagaagcac |
3414331 |
T |
|
| Q |
295 |
tcgaggcttcaaaactgtctccat |
318 |
Q |
| |
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|| ||||||||||| |||||||| |
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| T |
3414332 |
tcttggcttcaaaacagtctccat |
3414355 |
T |
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