View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20191_high_3 (Length: 364)
Name: NF20191_high_3
Description: NF20191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20191_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 85 - 364
Target Start/End: Original strand, 326024 - 326303
Alignment:
| Q |
85 |
gtagttatagaaaatgaggacaaggctaagttttttatggtgtgtttggatttacctttgtgggtcatgtatgggaagatttgtggtagnnnnnnncaat |
184 |
Q |
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| T |
326024 |
gtagttatagaaaatgaggacaaggctaagttttttatggtgtgtttggatttacctttgtgggtcatgtatgggaagatttgtggtagaaaaaaacaat |
326123 |
T |
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| Q |
185 |
ttgaaaataacttctccaaaatcattgagaggtatatatgaatgtgcaattggaaattttggggtcccaaaatatggaggaacaatgattggaacagttg |
284 |
Q |
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| T |
326124 |
ttgaaaataacttctccaaaatcattgagaggtatatatgaatgtgcaattggaaattttggggtcccaaaatatggaggaacaatgattggaacagttg |
326223 |
T |
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| Q |
285 |
tgtatccaaaacttaataagaatggttgcaccaaatttaatgatgcagatacttccttgaattccaagccaggaagcttc |
364 |
Q |
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| T |
326224 |
tgtatccaaaacttaataagaatggttgcaccaaatttaatgatgcagatacttccttgaattccaagccaggaagcttc |
326303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 325957 - 325986
Alignment:
| Q |
10 |
attatactaagcttattagtgattcaatgc |
39 |
Q |
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| T |
325957 |
attatactaagcttattagtgattcaatgc |
325986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 291
Target Start/End: Complemental strand, 27415139 - 27415032
Alignment:
| Q |
184 |
tttgaaaataacttctccaaaatcattgagaggtatatatgaatgtgcaattggaaattttggggtcccaaaatatggaggaacaatgattggaacagtt |
283 |
Q |
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| T |
27415139 |
tttgagaatcacttctccaaaatcgttgaagggtagttatgaatgtgccattggaaattttggggtgcctcagtatggtggaacattggttggttctgtt |
27415040 |
T |
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| Q |
284 |
gtgtatcc |
291 |
Q |
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| T |
27415039 |
gtgtatcc |
27415032 |
T |
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