View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20191_high_5 (Length: 326)

Name: NF20191_high_5
Description: NF20191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20191_high_5
NF20191_high_5
[»] chr3 (2 HSPs)
chr3 (25-202)||(46594936-46595114)
chr3 (271-326)||(46595182-46595237)
[»] chr6 (4 HSPs)
chr6 (25-202)||(4435724-4435902)
chr6 (26-202)||(4091945-4092123)
chr6 (271-326)||(4435601-4435656)
chr6 (271-326)||(4091822-4091877)
[»] chr4 (2 HSPs)
chr4 (25-202)||(47521207-47521386)
chr4 (275-326)||(47521084-47521135)
[»] chr5 (3 HSPs)
chr5 (25-160)||(37719256-37719392)
chr5 (271-326)||(37719424-37719479)
chr5 (271-308)||(30440652-30440689)
[»] chr1 (5 HSPs)
chr1 (46-202)||(16960829-16960987)
chr1 (83-202)||(25868922-25869043)
chr1 (34-103)||(26496088-26496157)
chr1 (271-326)||(25868799-25868854)
chr1 (275-326)||(16961059-16961110)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 46594936 - 46595114
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46594936 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 46595035  T
Q  125 cactctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgttt 202  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46595036 cattctgaacaattttggttgaactaaacagagcctccgttctttttaccactttttattctcaaaaataccattgttt 46595114  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 46595182 - 46595237
Alignment:
Q  271 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595182 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 46595237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 4435902 - 4435724
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435902 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 4435803  T
Q  125 cactctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgttt 202  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4435802 cattctgaacaattttggttgaactaaacagagtctccgttctttttaccactttttattctcaaaaataccattgttt 4435724  T

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Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 4092123 - 4091945
Alignment:
Q  26 cacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaac 125  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4092123 cacattggtaaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaac 4092024  T
Q  126 actctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttt 202  Q
    | ||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4092023 attcttaacaattttggttgaattaaacagagcctgccgttctttttaccactttttattctcaaaaataccattgttt 4091945  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 4435656 - 4435601
Alignment:
Q  271 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435656 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 4435601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 4091877 - 4091822
Alignment:
Q  271 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 326  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4091877 ccagatatttaattctgaaattaacaaattagcatacatcagattgggatagattg 4091822  T

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Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 47521386 - 47521207
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 124  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47521386 tcacattggtaaacaaattctaaaaacaatgatatacaacctgtttaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaa 47521287  T
Q  125 cactctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttt 202  Q
    || ||| |||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  47521286 cattcttaacaattttggttgaattaaacagaacctgccgttctttttaccactttttattctcaaaaataccattgttt 47521207  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 47521135 - 47521084
Alignment:
Q  275 atatttaattctaaaattaacaaattagcatacatcagattgggatagattg 326  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  47521135 atatttgattctaaaattaacaaattagcatacatcagattgagatagattg 47521084  T

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Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 37719256 - 37719392
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagctt-ca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37719256 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcca 37719355  T
Q  124 acactctgaacaattttggttgaactaaacagagcct 160  Q
    ||| |||||||||||||||||||||||||||||||||    
T  37719356 acattctgaacaattttggttgaactaaacagagcct 37719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 37719424 - 37719479
Alignment:
Q  271 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 326  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37719424 ccagatatttaattctaaaattagcaaattagcatacatcagattgggatagattg 37719479  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 30440652 - 30440689
Alignment:
Q  271 ccagatatttaattctaaaattaacaaattagcataca 308  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30440652 ccagatatttaattctaaaattcacaaattagcataca 30440689  T

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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 16960829 - 16960987
Alignment:
Q  46 aaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaacactctgaacaattttggttg 145  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||    
T  16960829 aaaaacagtgatataaaacctgttaaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaacattcttaacaattttggttg 16960928  T
Q  146 aactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttt 202  Q
    || |||||||||| | || ||||||||||||| ||||||||||||||||||||||||||    
T  16960929 aattaaacagagcatgccattctttttaccactttttattctcaaaaataccattgttt 16960987  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 25869043 - 25868922
Alignment:
Q  83 ttctacattgacaaatgcatctgtcaaaatacatagcttcaacactctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-tttt 180  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  25869043 ttctacattgacaaatgcatctatcaaaatacatagcttcaacattcttaacaattttggttgaattaaacagagcctgcagttctttttaccacttttt 25868944  T
Q  181 attctcaaaaataccattgttt 202  Q
    ||||||||||||||||||||||    
T  25868943 attctcaaaaataccattgttt 25868922  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 26496157 - 26496088
Alignment:
Q  34 taaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatc 103  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  26496157 taaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatc 26496088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 25868854 - 25868799
Alignment:
Q  271 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25868854 ccagatatttaattctaaaattaataaattagcatacatcagattgggatagattg 25868799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 16961059 - 16961110
Alignment:
Q  275 atatttaattctaaaattaacaaattagcatacatcagattgggatagattg 326  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16961059 atatttaattctaaaattaacaaattagcatacatcagattgtgatagattg 16961110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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