View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20191_low_1 (Length: 345)

Name: NF20191_low_1
Description: NF20191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20191_low_1
NF20191_low_1
[»] chr3 (2 HSPs)
chr3 (27-204)||(46594936-46595114)
chr3 (273-328)||(46595182-46595237)
[»] chr6 (4 HSPs)
chr6 (27-204)||(4435724-4435902)
chr6 (28-204)||(4091945-4092123)
chr6 (273-328)||(4435601-4435656)
chr6 (273-328)||(4091822-4091877)
[»] chr4 (2 HSPs)
chr4 (27-204)||(47521207-47521386)
chr4 (277-328)||(47521084-47521135)
[»] chr5 (3 HSPs)
chr5 (27-162)||(37719256-37719392)
chr5 (273-328)||(37719424-37719479)
chr5 (273-310)||(30440652-30440689)
[»] chr1 (5 HSPs)
chr1 (48-204)||(16960829-16960987)
chr1 (85-204)||(25868922-25869043)
chr1 (36-105)||(26496088-26496157)
chr1 (273-328)||(25868799-25868854)
chr1 (277-328)||(16961059-16961110)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 46594936 - 46595114
Alignment:
Q  27 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46594936 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 46595035  T
Q  127 cattctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgttt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46595036 cattctgaacaattttggttgaactaaacagagcctccgttctttttaccactttttattctcaaaaataccattgttt 46595114  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 46595182 - 46595237
Alignment:
Q  273 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595182 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 46595237  T

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Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 4435902 - 4435724
Alignment:
Q  27 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435902 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 4435803  T
Q  127 cattctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgttt 204  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4435802 cattctgaacaattttggttgaactaaacagagtctccgttctttttaccactttttattctcaaaaataccattgttt 4435724  T

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Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 4092123 - 4091945
Alignment:
Q  28 cacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaac 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4092123 cacattggtaaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaac 4092024  T
Q  128 attctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttt 204  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4092023 attcttaacaattttggttgaattaaacagagcctgccgttctttttaccactttttattctcaaaaataccattgttt 4091945  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 4435656 - 4435601
Alignment:
Q  273 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435656 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 4435601  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 4091877 - 4091822
Alignment:
Q  273 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 328  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4091877 ccagatatttaattctgaaattaacaaattagcatacatcagattgggatagattg 4091822  T

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Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 47521386 - 47521207
Alignment:
Q  27 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa 126  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47521386 tcacattggtaaacaaattctaaaaacaatgatatacaacctgtttaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaa 47521287  T
Q  127 cattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttt 204  Q
    |||||| |||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  47521286 cattcttaacaattttggttgaattaaacagaacctgccgttctttttaccactttttattctcaaaaataccattgttt 47521207  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 47521135 - 47521084
Alignment:
Q  277 atatttaattctaaaattaacaaattagcatacatcagattgggatagattg 328  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  47521135 atatttgattctaaaattaacaaattagcatacatcagattgagatagattg 47521084  T

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Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 37719256 - 37719392
Alignment:
Q  27 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagctt-ca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37719256 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcca 37719355  T
Q  126 acattctgaacaattttggttgaactaaacagagcct 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  37719356 acattctgaacaattttggttgaactaaacagagcct 37719392  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 37719424 - 37719479
Alignment:
Q  273 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 328  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37719424 ccagatatttaattctaaaattagcaaattagcatacatcagattgggatagattg 37719479  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 30440652 - 30440689
Alignment:
Q  273 ccagatatttaattctaaaattaacaaattagcataca 310  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30440652 ccagatatttaattctaaaattcacaaattagcataca 30440689  T

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Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 16960829 - 16960987
Alignment:
Q  48 aaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaacattctgaacaattttggttg 147  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  16960829 aaaaacagtgatataaaacctgttaaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaacattcttaacaattttggttg 16960928  T
Q  148 aactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttt 204  Q
    || |||||||||| | || ||||||||||||| ||||||||||||||||||||||||||    
T  16960929 aattaaacagagcatgccattctttttaccactttttattctcaaaaataccattgttt 16960987  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 25869043 - 25868922
Alignment:
Q  85 ttctacattgacaaatgcatctgtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-tttt 182  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  25869043 ttctacattgacaaatgcatctatcaaaatacatagcttcaacattcttaacaattttggttgaattaaacagagcctgcagttctttttaccacttttt 25868944  T
Q  183 attctcaaaaataccattgttt 204  Q
    ||||||||||||||||||||||    
T  25868943 attctcaaaaataccattgttt 25868922  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 26496157 - 26496088
Alignment:
Q  36 taaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatc 105  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  26496157 taaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatc 26496088  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 25868854 - 25868799
Alignment:
Q  273 ccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattg 328  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25868854 ccagatatttaattctaaaattaataaattagcatacatcagattgggatagattg 25868799  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 16961059 - 16961110
Alignment:
Q  277 atatttaattctaaaattaacaaattagcatacatcagattgggatagattg 328  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16961059 atatttaattctaaaattaacaaattagcatacatcagattgtgatagattg 16961110  T

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