View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20191_low_3 (Length: 326)

Name: NF20191_low_3
Description: NF20191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20191_low_3
NF20191_low_3
[»] chr4 (2 HSPs)
chr4 (11-308)||(28222418-28222715)
chr4 (90-138)||(18300666-18300714)
[»] chr5 (2 HSPs)
chr5 (90-219)||(37613459-37613588)
chr5 (90-219)||(37790189-37790318)
[»] chr7 (3 HSPs)
chr7 (85-138)||(32724004-32724057)
chr7 (90-138)||(48941240-48941288)
chr7 (90-138)||(6946414-6946462)
[»] chr6 (1 HSPs)
chr6 (90-138)||(19676841-19676889)
[»] chr3 (1 HSPs)
chr3 (90-138)||(13232832-13232880)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 28222418 - 28222715
Alignment:
Q  11 gagcagagagacccgtgactaattatgatttatgaacttaattatttgtagcatgctttggagacaagctaatggttgttgcttgtgaagtcttgaagga 110  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  28222418 gagcagagggacccgtgactaattatgatttatgaacttaataatttgtagcatgcttcggaaacaagctaatggttgttgcttgtgaagttttgaagga 28222517  T
Q  111 gattaaatttgaattctcagcaatggattatttttctttttcgagtagtggatactttgtaattctgtaattattatccgttttattaatttcaattaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  28222518 gattaaatttgaattctcagcaatggattatttttctttttcgagtagtggatactttgtaattcagtaattattatccgtttcattaatttcaattaaa 28222617  T
Q  211 ttcggccaattttattgagcaaaataaaatatacaatacaagnnnnnnnnntcttttagctatagaatgttagatgagttggatttatagggcttaat 308  Q
    || |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  28222618 tttggccaattttattgagcaaaataaaatatacaatacaaggaaaaaaaatcttttagctatagaatgttagatgagttggatttatagggcttaat 28222715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 18300666 - 18300714
Alignment:
Q  90 tgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggat 138  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  18300666 tgcttgtgaagtctggaaggagatcaaatttgaattcccagcaatggat 18300714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 37613459 - 37613588
Alignment:
Q  90 tgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggattatttttctttttcgagtagtggatactttgtaattctgtaattattatcc 189  Q
    |||||||||||||  ||||||||| |||||| |||||||||||||||||  | |||   || | || | ||||||||||||||| | |||||||| || |    
T  37613459 tgcttgtgaagtcgggaaggagatcaaatttaaattctcagcaatggatactatttgaattcccagcaatggatactttgtaatccagtaattatcattc 37613558  T
Q  190 gttttattaatttcaattaaattcggccaa 219  Q
    ||| | ||||||||||||||| ||||||||    
T  37613559 gttctgttaatttcaattaaactcggccaa 37613588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 37790189 - 37790318
Alignment:
Q  90 tgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggattatttttctttttcgagtagtggatactttgtaattctgtaattattatcc 189  Q
    |||||||||||||  ||||||||| |||||| |||||||||||||||||  | |||   || | || | ||||||||||||||| | |||||||| || |    
T  37790189 tgcttgtgaagtcgggaaggagatcaaatttaaattctcagcaatggatactatttgaattcccagcaatggatactttgtaatccagtaattatcattc 37790288  T
Q  190 gttttattaatttcaattaaattcggccaa 219  Q
    ||| | ||||||||||||||| ||||||||    
T  37790289 gttctgttaatttcaattaaactcggccaa 37790318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 32724004 - 32724057
Alignment:
Q  85 gttgttgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggat 138  Q
    ||||||||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  32724004 gttgttgcttgtgaagtctagaaggagatcaaatttgaattcccagcaatggat 32724057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 48941240 - 48941288
Alignment:
Q  90 tgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggat 138  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  48941240 tgcttgtgaagtctggaaggagatcaaatttgaattcccagcaatggat 48941288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 6946462 - 6946414
Alignment:
Q  90 tgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggat 138  Q
    |||||||||||||| ||||||||| ||||||||| || |||||||||||    
T  6946462 tgcttgtgaagtctggaaggagatcaaatttgaactcccagcaatggat 6946414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 19676889 - 19676841
Alignment:
Q  90 tgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggat 138  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  19676889 tgcttgtgaagtctggaaggagatcaaatttgaattcccagcaatggat 19676841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 13232832 - 13232880
Alignment:
Q  90 tgcttgtgaagtcttgaaggagattaaatttgaattctcagcaatggat 138  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  13232832 tgcttgtgaagtctggaaggagatcaaatttgaattcccagcaatggat 13232880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University