View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20192_low_1 (Length: 670)
Name: NF20192_low_1
Description: NF20192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20192_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 19 - 654
Target Start/End: Original strand, 38762093 - 38762728
Alignment:
| Q |
19 |
atatgctgctatgtttcttctgtcaaaagctgcattcgaccatggcatgaacaatttcgtctttgttttctacagacaatctgcagctactatttttctc |
118 |
Q |
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| T |
38762093 |
atatgctgctatgtttcttctgtcaaaagctgcattcgaccatggcatgaacaatttcgtctttgttttctacagacaatctgcagctactatttttctc |
38762192 |
T |
|
| Q |
119 |
acaccttttgctctcttctttgaatggtatgaataatcttcaattaattctttcttttgatttccatttaattattcataccagctttgattactgaaag |
218 |
Q |
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| T |
38762193 |
acaccttttgctctcttctttgaatggtatgaataatcttcaattaattctttcttttgatttccatttaattattcataccagctttgattactgaaag |
38762292 |
T |
|
| Q |
219 |
ctatactataatttggacacaggaaaagtgcaccgcctctgccattcacgacgttttgcaagatattcttcatttctttcatcgggtgggtatgttatgt |
318 |
Q |
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| T |
38762293 |
ctatactataatttggacacaggaaaagtgcaccgcctctgccattcacgacgttttgcaagatcttcttcatttctttcatcgggtgggtatgttatgt |
38762392 |
T |
|
| Q |
319 |
atatgtatgtccaaattagctagagtaattcatcaaaattgaagtgcatgtatgtgttggttatgtataaagtctgtaaaacctagttcaactgccgaag |
418 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38762393 |
atatgtgtgtccaaattagctagagtaattcatcaaaattgaagtgcatgtatgtgttggttatgtataaagtctgtaaaacctagttcaattgccgaag |
38762492 |
T |
|
| Q |
419 |
ttgttggttgaacatctttacttgagtttgaacttgaacctcacagttatatgtgagagtcggtgtttaccacttcttttacacaccaaaacaaaaacta |
518 |
Q |
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| T |
38762493 |
ttgttggttgaacatctttactcgagtttgaacttgaaccttgcagttatatgtgagagtctgtgtttaccacttcttttacacaccaaaacaaaaacta |
38762592 |
T |
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| Q |
519 |
tataatatataatgaaatttgttgatctatgatcaggatcacatcgagtttggacatatatggtattgctctaataaacacttctgcaactttggccgct |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38762593 |
tataatatataatgaaatttgttgatctatgatcaggatcacatcgagtttggacatatatggtattgctctaataaacacttctgcaactttggccgct |
38762692 |
T |
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| Q |
619 |
gccactactaactgtctcccagtgattaccttcttc |
654 |
Q |
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| T |
38762693 |
gccactactaactgtctcccagtgattaccttcttc |
38762728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 43620913 - 43620982
Alignment:
| Q |
28 |
tatgtttcttctgtcaaaagctgcattcgaccatggcatgaacaatttcgtctttgttttctacagacaa |
97 |
Q |
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||||||||| || |||||||||||||| || |||||||| ||||||||| ||||||| ||||| |||||| |
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| T |
43620913 |
tatgtttctactctcaaaagctgcatttgatcatggcatcaacaatttcatctttgtgttctatagacaa |
43620982 |
T |
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