View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20192_low_14 (Length: 237)
Name: NF20192_low_14
Description: NF20192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20192_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43880408 - 43880633
Alignment:
| Q |
1 |
ttttatatttttcttaatgctattaaagaaaggccttattgta-----caaattaccttcttttctcagactggtccaaatggagcaacaagtgagaaac |
95 |
Q |
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| T |
43880408 |
ttttatatttttcttaatgctattaaagaaaggccttattgtactgtacaaattaccttcttttctcagactggtccaaatggagcaacaagtgagaaac |
43880507 |
T |
|
| Q |
96 |
tcggtgttaattatcgagctctaaatgacctcttcagaatttccacaagcagaggaagcctcatagactatgagatttgggttcaaatggttgagatata |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43880508 |
tcggtgttaattatcgagctctaaatgacctcttcagaatttccacaagcagaggaagcctcatagactatgagatttgggttcaaatggttgagatata |
43880607 |
T |
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| Q |
196 |
taacgagcaagttcgtgacttgttat |
221 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43880608 |
taacgagcaagttcgtgacttgttat |
43880633 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 31647336 - 31647266
Alignment:
| Q |
61 |
tcagactggtccaaatggagcaacaagtgagaaactcggtgttaattatcgagctctaaatgacctcttca |
131 |
Q |
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| T |
31647336 |
tcagagtggtccaaatggtgcatccaatgagaatcttggtgttaactatagagctctaaatgacctattca |
31647266 |
T |
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