View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20192_low_18 (Length: 209)

Name: NF20192_low_18
Description: NF20192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20192_low_18
NF20192_low_18
[»] chr6 (1 HSPs)
chr6 (14-47)||(20740453-20740486)
[»] chr7 (2 HSPs)
chr7 (16-47)||(11698582-11698613)
chr7 (16-46)||(3302427-3302457)
[»] chr5 (3 HSPs)
chr5 (16-47)||(38958411-38958442)
chr5 (16-45)||(26656630-26656659)
chr5 (16-45)||(26928217-26928246)
[»] chr4 (3 HSPs)
chr4 (16-47)||(47518690-47518721)
chr4 (16-47)||(53202118-53202149)
chr4 (11-45)||(23054474-23054508)
[»] chr1 (1 HSPs)
chr1 (16-47)||(34654830-34654861)
[»] chr3 (1 HSPs)
chr3 (16-46)||(43275830-43275860)
[»] chr2 (3 HSPs)
chr2 (14-47)||(1551837-1551870)
chr2 (14-47)||(1895260-1895293)
chr2 (18-46)||(17375153-17375181)


Alignment Details
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 20740453 - 20740486
Alignment:
Q  14 catcaccaaaactaccattgaccaccacaaaaat 47  Q
    ||||||||||||||||||||||||||||||||||    
T  20740453 catcaccaaaactaccattgaccaccacaaaaat 20740486  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 11698613 - 11698582
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaaat 47  Q
    ||||||||||||||||||||||||||||||||    
T  11698613 tcaccaaaactaccattgaccaccacaaaaat 11698582  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 3302427 - 3302457
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaaa 46  Q
    |||||||||||||||||||||||||||||||    
T  3302427 tcaccaaaactaccattgaccaccacaaaaa 3302457  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 38958442 - 38958411
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaaat 47  Q
    ||||||||||||||||||||||||||||||||    
T  38958442 tcaccaaaactaccattgaccaccacaaaaat 38958411  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 26656630 - 26656659
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaa 45  Q
    ||||||||||||||||||||||||||||||    
T  26656630 tcaccaaaactaccattgaccaccacaaaa 26656659  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 26928217 - 26928246
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaa 45  Q
    ||||||||||||||||||||||||||||||    
T  26928217 tcaccaaaactaccattgaccaccacaaaa 26928246  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 47518721 - 47518690
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaaat 47  Q
    ||||||||||||||||||||||||||||||||    
T  47518721 tcaccaaaactaccattgaccaccacaaaaat 47518690  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 53202118 - 53202149
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaaat 47  Q
    ||||||||||||||||||||||||||||||||    
T  53202118 tcaccaaaactaccattgaccaccacaaaaat 53202149  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 23054508 - 23054474
Alignment:
Q  11 catcatcaccaaaactaccattgaccaccacaaaa 45  Q
    |||| ||||||||||||||||||||||||||||||    
T  23054508 catcgtcaccaaaactaccattgaccaccacaaaa 23054474  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 34654830 - 34654861
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaaat 47  Q
    ||||||||||||||||||||||||||||||||    
T  34654830 tcaccaaaactaccattgaccaccacaaaaat 34654861  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 43275830 - 43275860
Alignment:
Q  16 tcaccaaaactaccattgaccaccacaaaaa 46  Q
    |||||||||||||||||||||||||||||||    
T  43275830 tcaccaaaactaccattgaccaccacaaaaa 43275860  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 1551870 - 1551837
Alignment:
Q  14 catcaccaaaactaccattgaccaccacaaaaat 47  Q
    |||||||||||||||||||||||||| |||||||    
T  1551870 catcaccaaaactaccattgaccacctcaaaaat 1551837  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 1895260 - 1895293
Alignment:
Q  14 catcaccaaaactaccattgaccaccacaaaaat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  1895260 catcaccaaaactaccattgaacaccacaaaaat 1895293  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 17375153 - 17375181
Alignment:
Q  18 accaaaactaccattgaccaccacaaaaa 46  Q
    |||||||||||||||||||||||||||||    
T  17375153 accaaaactaccattgaccaccacaaaaa 17375181  T

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