View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20192_low_2 (Length: 491)
Name: NF20192_low_2
Description: NF20192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20192_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Complemental strand, 28343423 - 28342950
Alignment:
| Q |
13 |
taggttgattgaagtatgtaaagtgttaagaaattaattgaaataagttctaaggaaactacgtatgatctggcctgttaggagttgaataaaacactga |
112 |
Q |
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| T |
28343423 |
taggttgattgaagtatgtaaagtgttaagaaattaattgaaataagttctaaggaaactacgtatgatctggcctgttaggagttgaataaaacactga |
28343324 |
T |
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| Q |
113 |
aacggttatatcctaattactcnnnnnnnnnnnngaattggaaggagaatctaa-at--tgg----------atttactcataaaatcaagaagtaatga |
199 |
Q |
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| T |
28343323 |
aacggttatattctaattactctttttctattttgaattggagggagaatctaagatcgtggtcgttgtaatatttgctcataaaatcaagaagtaatga |
28343224 |
T |
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| Q |
200 |
tagtaacaatcaaaattggatttactcgtgtagcataagttgtcttgcgttttaaaacgccgtcggggcaattaagggactatctagcaacacggttttt |
299 |
Q |
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| T |
28343223 |
tagtaacaatcaaaattggatttactcgtgtagcataagttgtcttgcgttttaaaacgccgtcggggcaattaagggactatctagcaacatggttttt |
28343124 |
T |
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| Q |
300 |
acttaattatgtaggttggttatatgctttatttgtgaataacatgctatgttgaattgtgtatccaaatgggggttatgttctttcaatgtgatttgtg |
399 |
Q |
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| T |
28343123 |
acttaattatgtaggttggttatatgttttatttgtgaataacatgctatgttgaattgtgtatccaaatgggggttatgttctttcaatgtgatttgtg |
28343024 |
T |
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| Q |
400 |
tatatgttgaaatcaatatatgaactacttattgatcatgatgataatgcctactttcatgaatgatttggata |
473 |
Q |
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| T |
28343023 |
tatatgttgaaatgaatatatgaactacttattgatcatgatgataatgcctacttttatgtatgatttggata |
28342950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 568862 - 568891
Alignment:
| Q |
20 |
attgaagtatgtaaagtgttaagaaattaa |
49 |
Q |
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| T |
568862 |
attgaagtatgtaaagtgttaagaaattaa |
568891 |
T |
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