View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20192_low_4 (Length: 397)
Name: NF20192_low_4
Description: NF20192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20192_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 39555348 - 39555723
Alignment:
| Q |
12 |
atgaatcagttgataatatgatacaacgtgcttttggaatgcttcacacatggcagcaagcatgtcgaatcggtatgagtacaaatactattagccaggc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39555348 |
atgaatcagttgataatatgatacaacgtgcttttggaatgcttcacacatggcagcaagcacgtcgaatcggtatgagtacaaatactattagccaggc |
39555447 |
T |
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| Q |
112 |
cgatcggaatatcatatggcaacctccatcgctaggatatgtcaaatgcaacatagatgtggcaatctctacatattttcaaaaagtaggtatgggtgct |
211 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39555448 |
cgatcggaatatcatatggcaacctacatcgctaggatatgtcaaatgcaacatagatgtggcaatctctacatattttcaaaaagtaggtatgggtgct |
39555547 |
T |
|
| Q |
212 |
tgccttcggaatgcaacgagacattttttgggagctataacagatgtttgcaatgctgttatgataactctagaggtagaatgttgggggtttgaaaagg |
311 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39555548 |
tgccttaggaatgcaacgagacattttttgggagctataacagatgtttgcaatgttgttatgataacttcagaggtagaatgttgggggtttgaaaagg |
39555647 |
T |
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| Q |
312 |
acacttgaatggcttgatacgttggaacaccacaacgtcatattggaaatggattgtaaatcggtcgttgatgatg |
387 |
Q |
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| T |
39555648 |
acacttgaatggcttgatacgttggaacaccacaacgtcatattggaaatggattgtaaatcgatcgttgatgatg |
39555723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 19528421 - 19528503
Alignment:
| Q |
304 |
tgaaaaggacacttgaatggcttgatacgttggaacaccacaacgtcatattggaaatggattgtaaatcggtcgttgatgat |
386 |
Q |
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| T |
19528421 |
tgaaaaagacacttgaatggattggtacattggaacactacaacgtcatattggaaacggattgcaaactggtcgttgatgat |
19528503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 257
Target Start/End: Original strand, 19528281 - 19528392
Alignment:
| Q |
144 |
taggatatgtcaaatgcaacatagatgtggcaatctctacatattttcaaaaagtaggtatgggtgcttgccttcggaatgcaacgagacattttttggg |
243 |
Q |
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||||||||||||||||||||||||||| ||||| | | ||| | || |||||||||||| | | |||||||||||||||| |||||||||| |||| |
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| T |
19528281 |
taggatatgtcaaatgcaacatagatgcagcaattt-tgtgtatggttaacaagtaggtatggtt-cgtgccttcggaatgcaatgagacattttctggg |
19528378 |
T |
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| Q |
244 |
agctataacagatg |
257 |
Q |
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| T |
19528379 |
agctatatcagatg |
19528392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 19527830 - 19527949
Alignment:
| Q |
12 |
atgaatcagttgataatatgatacaacgtgcttttggaatgcttcacacatggcagcaagcatgtcgaatcggtatgagtacaaatactattagccaggc |
111 |
Q |
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|||||||| |||||||| || | ||||||||||| ||||||||||| | ||||| ||||| ||||||| | || || ||||||| ||||||| ||| | |
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| T |
19527830 |
atgaatcaattgataatgtgttgcaacgtgctttcggaatgcttcatatttggcaataagcacgtcgaattgatacgaatacaaatgctattagtcagac |
19527929 |
T |
|
| Q |
112 |
cgatcggaatatcatatggc |
131 |
Q |
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|||| ||||||||||||| |
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| T |
19527930 |
atatcgaaatatcatatggc |
19527949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 22944876 - 22944729
Alignment:
| Q |
20 |
gttgataatatgatacaacgtgcttttggaatgcttcacacatggcagcaagcatgtcgaatcggtatgagtacaaatactattagccaggccgatcgga |
119 |
Q |
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||||||||| || | |||||| |||||||||| |||||| || | ||||||| ||| ||||| ||| |||| ||||| ||||||||||||| | | | |
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| T |
22944876 |
gttgataatgtgttgcaacgtcattttggaatggttcacatattgaagcaagcgtgttgaatcagtacgagtgcaaatgctattagccaggcaaagagta |
22944777 |
T |
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| Q |
120 |
atatcatatggcaacctccatcgctaggatatgtcaaatgcaacatag |
167 |
Q |
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|||||| ||||| ||| ||||||| | |||| |||||||||| ||||| |
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| T |
22944776 |
atatcagatggcgaccaccatcgcaaagataagtcaaatgcagcatag |
22944729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 367
Target Start/End: Complemental strand, 22944583 - 22944528
Alignment:
| Q |
312 |
acacttgaatggcttgatacgttggaacaccacaacgtcatattggaaatggattg |
367 |
Q |
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|||||||||||||| |||| | |||||||||||||| |||||||||||||||||| |
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| T |
22944583 |
acacttgaatggctagataattcggaacaccacaacgacatattggaaatggattg |
22944528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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