View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20192_low_6 (Length: 348)
Name: NF20192_low_6
Description: NF20192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20192_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 43011175 - 43011042
Alignment:
| Q |
15 |
caaaggacagtgaacaaaacaaaaaa-caaattaaagggagcagaaaagaa-cggttgcataaaatgacaattgagagaataaaacagtgcaagaaaaat |
112 |
Q |
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| T |
43011175 |
caaaggacagtcaacaaaacaaaaaaacaaattaaagggagcagaaaagaaacggttgcataaaatgacaagttagagaataaaacagtgcaagaaaaat |
43011076 |
T |
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| Q |
113 |
acacactatggtattataaaaagggagcactctc |
146 |
Q |
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| T |
43011075 |
acacactatggtattataaaaagggagcactctc |
43011042 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Complemental strand, 43011037 - 43011007
Alignment:
| Q |
299 |
agtcacatgccaagatcttcataacggattt |
329 |
Q |
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| T |
43011037 |
agtcacatgccaagatcttcataacggattt |
43011007 |
T |
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