View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20192_low_7 (Length: 344)
Name: NF20192_low_7
Description: NF20192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20192_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 103 - 327
Target Start/End: Original strand, 39638746 - 39638969
Alignment:
| Q |
103 |
tgcacatgtgaaacccgtcaaatcttatataccagtcaatgatattattcataacccaatataaaaacgaagaaatatatacattgatatttccaataga |
202 |
Q |
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| T |
39638746 |
tgcacatgtgaaacccgtcaaaccttatataccagtcaatgatattattcataacccaatataaaaacgaagaaatgtatacattgatatttccaataga |
39638845 |
T |
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| Q |
203 |
ttcagtccaaatatatatttttcgagtacatctgactaagtcagagggcnnnnnnnttatcaaaccaagtaaaaagctgatgaaaaatgtaaacctaata |
302 |
Q |
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| T |
39638846 |
ttcagtccaactatatatttttcgagtacatctgactaagtcaga-ggcaaaaaaattatcataccaagtaaaaagctgaggaaaaatgtaaacctaata |
39638944 |
T |
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| Q |
303 |
tgcgctacttttagatgatcgtttt |
327 |
Q |
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| T |
39638945 |
tgcgctacttttagatgatcgtttt |
39638969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 39638659 - 39638702
Alignment:
| Q |
16 |
atatataacatctagaatctagatttacacattaaagggttatt |
59 |
Q |
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| T |
39638659 |
atatataacatctagaatctagatttaaacattaaagggttatt |
39638702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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