View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20193_high_10 (Length: 321)

Name: NF20193_high_10
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20193_high_10
NF20193_high_10
[»] chr2 (1 HSPs)
chr2 (13-305)||(10014168-10014459)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 10014459 - 10014168
Alignment:
Q  13 aatatgatttaccgtgactaacacactacaagagaaaagattatcttcggccattatcttccgagggattttggttatttccaagggtttttgtccctag 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10014459 aatatgatttaccgtgactaacgcactacaagagaaaagattatcttcggccatt-tcttccgagggattttggttatttccaagggtttttgtccctag 10014361  T
Q  113 ggaaccaatgatttacttgtagtggtggtgtctaggtagagaatagatagtaaagactatttataatgtgacaaaacttgggaaattaactattagtttt 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10014360 gaaaccaatgatttacttgtagtggtggtgtctaggtagagaatagatagtaaagactatttataatgtgacaaaacttgggaaattaactattagtttt 10014261  T
Q  213 aggggataacnnnnnnnnnnnnnnnnctgtgctttaacaggaagttggatcaaaagtattgtttccaaggcaaatatatagagtaatgtatat 305  Q
    ||||||| ||                || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10014260 aggggatgacaaaagaaaaaagaaaactttgctttagcaggaagttggatcaaaagtattgtttccaaggcaaatatatagagtaatgtatat 10014168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University