View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_high_11 (Length: 219)
Name: NF20193_high_11
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 1180377 - 1180191
Alignment:
| Q |
15 |
caaaggatgcaagttcatacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactccttgattccatccattggcatca |
114 |
Q |
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| T |
1180377 |
caaaggatgcaagttcatacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactccttgagtccatccattggcatca |
1180278 |
T |
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| Q |
115 |
ccaacagtgaaatcagttgcaaatgcataaggaaaggccaataaaagaacaaagaaagaagctatcattgatgtactcatgcctata |
201 |
Q |
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| T |
1180277 |
ccaacagtgaaatcagttgcaaatgcataaggaaaggccaataaaagaacaaagaaagaagctatcattgatgtactcatgcctata |
1180191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 1187378 - 1187207
Alignment:
| Q |
30 |
catacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactccttgattccatccattggcatcaccaacagtgaaatca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
1187378 |
catacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactcctagattccatccattggcatcaccaacggtgaaatca |
1187279 |
T |
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| Q |
130 |
gttgcaaatgcataaggaaaggccaataaaagaacaaagaaagaagctatcattgatgtactcatgcctata |
201 |
Q |
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| T |
1187278 |
gttgcaaatgcataaggaaaggccaacaaaagaacaaagaaagaagctatcattgatgtattcatgcctata |
1187207 |
T |
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