View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20193_high_3 (Length: 551)

Name: NF20193_high_3
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20193_high_3
NF20193_high_3
[»] chr5 (5 HSPs)
chr5 (16-534)||(20589289-20589806)
chr5 (119-160)||(21145939-21145980)
chr5 (119-160)||(21148109-21148150)
chr5 (119-160)||(23206206-23206247)
chr5 (119-160)||(42521703-42521744)
[»] scaffold0301 (1 HSPs)
scaffold0301 (119-160)||(20733-20774)
[»] scaffold0009 (1 HSPs)
scaffold0009 (119-160)||(105513-105554)
[»] chr8 (2 HSPs)
chr8 (119-160)||(3583302-3583343)
chr8 (119-160)||(5881146-5881187)
[»] chr7 (7 HSPs)
chr7 (119-160)||(3162872-3162913)
chr7 (119-160)||(8487032-8487073)
chr7 (119-160)||(8512707-8512748)
chr7 (119-160)||(8513475-8513516)
chr7 (119-160)||(30469515-30469556)
chr7 (119-160)||(31179930-31179971)
chr7 (119-160)||(38059850-38059891)
[»] chr6 (3 HSPs)
chr6 (119-160)||(19651074-19651115)
chr6 (119-160)||(19653876-19653917)
chr6 (119-160)||(32907430-32907471)
[»] chr4 (3 HSPs)
chr4 (119-160)||(29212011-29212052)
chr4 (119-160)||(41695387-41695428)
chr4 (119-159)||(45919514-45919554)
[»] chr3 (7 HSPs)
chr3 (119-160)||(20200620-20200661)
chr3 (119-160)||(20202804-20202845)
chr3 (119-160)||(47167890-47167931)
chr3 (119-160)||(53949325-53949366)
chr3 (119-160)||(53950089-53950130)
chr3 (119-159)||(20199870-20199910)
chr3 (119-159)||(30834444-30834484)
[»] chr2 (5 HSPs)
chr2 (119-160)||(122966-123007)
chr2 (119-164)||(2055088-2055133)
chr2 (119-160)||(4776988-4777029)
chr2 (119-160)||(19386930-19386971)
chr2 (119-160)||(42849510-42849551)
[»] chr1 (7 HSPs)
chr1 (119-160)||(5496548-5496589)
chr1 (119-160)||(7013047-7013088)
chr1 (119-160)||(21790753-21790794)
chr1 (119-160)||(24081457-24081498)
chr1 (119-160)||(31151445-31151486)
chr1 (119-160)||(39848889-39848930)
chr1 (119-160)||(47374855-47374896)


Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Original strand, 20589289 - 20589806
Alignment:
Q  16 aatataattaggtggttaagttggtagttcatgttacctcccaacctttctggtatttttcaaaggttataggcttgactttatagtttcccatagagat 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20589289 aatataattaggtggttaagttggtagttcatgttacgtcccaacctttctggtaattttcaaaggttataggcttgactttatagtttcccatagagat 20589388  T
Q  116 aaaataggatcaaatgacaccaaggtatcaaagttaatttgacacaaaagacacctaatcattactgttaatttcaaataatctaaaggctcgtatctac 215  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||     
T  20589389 aaaataagatcaaatgacaccaaggtgtcaaagttaatttgacaccaaagacacctaatcaataccgttaatttcaaataatctaaaggctcatatctat 20589488  T
Q  216 tcactcattaacctgatttggtgtcacattaacttttatacacacacatacacattgtcattaaaacacaaaaagatctcaaaatgagctatgaatgctt 315  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20589489 tcactcattaacatgatttggtgtcacaataatttttatacacacatatacacattgtcattaaa-cacaaaaagatctcaaaatgagctatgaatgctt 20589587  T
Q  316 gtaaattgcgtacctgtctacaaactgggcaagttttactcatactcatccattcgtatatacagctaaggtgataatggtgacagcaccgtgtagcaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20589588 gtaaattgcgtacctgtctacaaactgggcaagttttactcatactcatccattcgtatatacagctaaggtgataatggtgacagcaccgtgtagcaat 20589687  T
Q  416 cttagggttttcatcggtataatctgcaacacatatatatacgatactaatttgaacaatgtagctcttaaatcacatcaaaatagtatcatggtgttgg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20589688 cttagggttttcatcggtataatctgcaacacatatatatacgatactaatttgaacaatgtagctcttaaatcacatcaaaatagtatcatggtgttgg 20589787  T
Q  516 ttactaagcagtagattgt 534  Q
    |||||||||||||||||||    
T  20589788 ttactaagcagtagattgt 20589806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 21145939 - 21145980
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  21145939 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 21145980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 21148150 - 21148109
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  21148150 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 21148109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 23206247 - 23206206
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  23206247 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 23206206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 42521744 - 42521703
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  42521744 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 42521703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 20733 - 20774
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  20733 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 20774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 105513 - 105554
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  105513 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 105554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 3583343 - 3583302
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||    
T  3583343 ataggatcaaatgacaccatggtgtcaaaattaatttgacac 3583302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 5881146 - 5881187
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  5881146 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 5881187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 3162872 - 3162913
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  3162872 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 3162913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 8487032 - 8487073
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  8487032 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 8487073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 8512707 - 8512748
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  8512707 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 8512748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 8513516 - 8513475
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  8513516 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 8513475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 30469515 - 30469556
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  30469515 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 30469556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 31179971 - 31179930
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  31179971 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 31179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 38059850 - 38059891
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  38059850 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 38059891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 19651074 - 19651115
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  19651074 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 19651115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 19653917 - 19653876
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  19653917 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 19653876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 32907430 - 32907471
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||    
T  32907430 ataggatcaaatgacaccatggtgtcaaatttaatttgacac 32907471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 29212011 - 29212052
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  29212011 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 29212052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 41695387 - 41695428
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  41695387 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 41695428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 45919514 - 45919554
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgaca 159  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  45919514 ataggatcaaatgacaccaaggtgtcaaattaaatttgaca 45919554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 20200661 - 20200620
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  20200661 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 20200620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 20202845 - 20202804
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  20202845 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 20202804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 47167890 - 47167931
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  47167890 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 47167931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 53949366 - 53949325
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  53949366 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 53949325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 53950130 - 53950089
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  53950130 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 53950089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 20199870 - 20199910
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgaca 159  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  20199870 ataggatcaaatgacaccaaggtgtcaaattaaatttgaca 20199910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 30834484 - 30834444
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgaca 159  Q
    |||||||||||||||| |||||||||||| | |||||||||    
T  30834484 ataggatcaaatgacatcaaggtatcaaattaaatttgaca 30834444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 123007 - 122966
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  123007 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 122966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 2055133 - 2055088
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacacaaaa 164  Q
    ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  2055133 ataggatcaaatgacaccatggtgtcaaaattagtttgacacaaaa 2055088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 4777029 - 4776988
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  4777029 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 4776988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 19386971 - 19386930
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  19386971 ataggatcaaattacaccaaggtatcaaattaaatttgacac 19386930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 42849551 - 42849510
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  42849551 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 42849510  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 5496548 - 5496589
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  5496548 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 5496589  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 7013088 - 7013047
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  7013088 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 7013047  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 21790753 - 21790794
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  21790753 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 21790794  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 24081457 - 24081498
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||    
T  24081457 ataggatcaaatgacaccatggtgtcaaaattaatttgacac 24081498  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 31151486 - 31151445
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  31151486 ataggatcaaatgacaccatggtatcaaaattagtttgacac 31151445  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 39848930 - 39848889
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  39848930 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 39848889  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 47374896 - 47374855
Alignment:
Q  119 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 160  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  47374896 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 47374855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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